Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_028951 Daucus carota HOM05D007660 ORTHO05D009442 1.5e-66 257.7 186 100.0
Cc10_g15650 Coffea canephora HOM05D007660 ORTHO05D009442 4.7e-41 172.9 185 71.4
Migut.B01252 Erythranthe guttata HOM05D007660 ORTHO05D009442 1.3e-38 164.9 185 70.3
CSS0016503 Camellia sinensis var. sinensis HOM05D007660 ORTHO05D009442 2.9e-38 163.7 185 71.4
Peaxi162Scf00281g00043 Petunia axillaris HOM05D007660 ORTHO05D009442 6.4e-38 162.5 185 73.0
Dinv44841 Davidia involucrata HOM05D007660 ORTHO05D009442 1.1e-37 161.8 119 64.7
FAN18G0914 Fragaria x ananassa HOM05D007660 ORTHO05D009442 1.4e-37 161.4 122 62.3
Aqoxy6G01459 Aquilegia oxysepala HOM05D007660 ORTHO05D009442 5.4e-37 159.5 122 61.5
Cfa013697 Carpinus fangiana HOM05D007660 ORTHO05D009442 7.1e-37 159.1 122 63.9
Haze_22339 Corylus avellana HOM05D007660 ORTHO05D009442 7.1e-37 159.1 122 63.9
HanXRQChr09g0250871 Helianthus annuus HOM05D007660 ORTHO05D009442 9.2e-37 158.7 114 65.8
FAN13G3224 Fragaria x ananassa HOM05D007660 ORTHO05D009442 1.2e-36 158.3 122 63.1
MSTRG.2718 Avicennia marina HOM05D007660 ORTHO05D009442 1.6e-36 157.9 185 70.3
Rhsim06G0073800 Rhododendron simsii HOM05D007660 ORTHO05D009442 2.1e-36 157.5 185 69.7
Lsat_1_v5_gn_9_75000 Lactuca sativa HOM05D007660 ORTHO05D009442 2.7e-36 157.1 114 64.0
RcHm_v2.0_Chr4g0424581 Rosa chinensis HOM05D007660 ORTHO05D009442 7.8e-36 155.6 117 63.2
Sopen00g004320 Solanum pennellii HOM05D007660 ORTHO05D009442 1.3e-35 154.8 185 70.3
Sopen00g006420 Solanum pennellii HOM05D007660 ORTHO05D009442 1.3e-35 154.8 185 70.3
Eucgr.A00716 Eucalyptus grandis HOM05D007660 ORTHO05D009442 1.7e-35 154.5 185 71.9
Nitab4.5_0013728g0010 Nicotiana tabacum HOM05D007660 ORTHO05D009442 1.7e-35 154.5 114 64.0
ECA232G0036 Erigeron canadensis HOM05D007660 ORTHO05D009442 3.0e-35 153.7 114 63.2
Solyc04g076070.1 Solanum lycopersicum HOM05D007660 ORTHO05D009442 3.0e-35 153.7 185 70.3
A02p04930 Brassica napus HOM05D007660 ORTHO05D009442 3.9e-35 153.3 122 59.8
Atru.chr13.1043 Acer truncatum HOM05D007660 ORTHO05D009442 5.1e-35 152.9 118 61.0
Nn5g29930 Nelumbo nucifera HOM05D007660 ORTHO05D009442 5.1e-35 152.9 185 68.6
Nitab4.5_0001507g0030 Nicotiana tabacum HOM05D007660 ORTHO05D009442 5.1e-35 152.9 114 63.2
EL10Ac7g16170 Beta vulgaris HOM05D007660 ORTHO05D009442 8.6e-35 152.1 114 63.2
BraA02t05452Z Brassica rapa HOM05D007660 ORTHO05D009442 8.6e-35 152.1 122 59.0
PGSC0003DMG400012911 Solanum tuberosum HOM05D007660 ORTHO05D009442 1.9e-34 151.0 185 68.6
Sp6g25850 Schrenkiella parvula HOM05D007660 ORTHO05D009442 2.5e-34 150.6 122 58.2
Sc23g0000600 Simmondsia chinensis HOM05D007660 ORTHO05D009442 3.3e-34 150.2 185 68.6
Aa31LG11G11130 Aethionema arabicum HOM05D007660 ORTHO05D009442 4.3e-34 149.8 122 57.4
Duzib168G2083 Durio zibethinus HOM05D007660 ORTHO05D009442 4.3e-34 149.8 108 65.7
Thhalv10001849m.g Eutrema salsugineum HOM05D007660 ORTHO05D009442 4.3e-34 149.8 185 42.7
BcaC03g13602 Brassica carinata HOM05D007660 ORTHO05D009442 7.3e-34 149.1 122 57.4
C02p09910 Brassica napus HOM05D007660 ORTHO05D009442 7.3e-34 149.1 122 57.4
BolC2t06898H Brassica oleracea HOM05D007660 ORTHO05D009442 7.3e-34 149.1 122 57.4
Thhalv10010303m.g Eutrema salsugineum HOM05D007660 ORTHO05D009442 7.3e-34 149.1 122 57.4
AT5G18475 Arabidopsis thaliana HOM05D007660 ORTHO05D009442 9.5e-34 148.7 122 55.7
FAN08G3071 Fragaria x ananassa HOM05D007660 ORTHO05D009442 9.5e-34 148.7 116 60.3
Cpa.g.sc309.5 Carica papaya HOM05D007660 ORTHO05D009442 1.6e-33 147.9 114 59.6
Ciclev10000867m.g Citrus clementina HOM05D007660 ORTHO05D009442 1.6e-33 147.9 185 68.1
Lj3P942T62 Lonicera japonica HOM05D007660 ORTHO05D009442 1.6e-33 147.9 185 67.0
Thecc.09G257500 Theobroma cacao HOM05D007660 ORTHO05D009442 1.6e-33 147.9 108 64.8
AL6G29730 Arabidopsis lyrata HOM05D007660 ORTHO05D009442 2.1e-33 147.5 122 56.6
Prupe.1G528200 Prunus persica HOM05D007660 ORTHO05D009442 2.8e-33 147.1 104 66.3
SGA_v2.0_scaffold126G33870 Striga asiatica HOM05D007660 ORTHO05D009442 2.8e-33 147.1 185 68.1
ClCG11G014470 Citrullus lanatus HOM05D007660 ORTHO05D009442 6.2e-33 146.0 116 61.2
CARHR194540 Cardamine hirsuta HOM05D007660 ORTHO05D009442 8.1e-33 145.6 122 55.7
SalBow3G4457 Salvia bowleyana HOM05D007660 ORTHO05D009442 8.1e-33 145.6 185 65.4
BcaB05g23329 Brassica carinata HOM05D007660 ORTHO05D009442 1.1e-32 145.2 122 56.6
COL.COLO4_24918 Corchorus olitorius HOM05D007660 ORTHO05D009442 1.1e-32 145.2 106 65.1
CsaV3_3G047880 Cucumis sativus L. HOM05D007660 ORTHO05D009442 1.4e-32 144.8 114 61.4
Actinidia30813 Actinidia chinensis HOM05D007660 ORTHO05D009442 4.0e-32 143.3 185 68.1
FAN04G1497 Fragaria x ananassa HOM05D007660 ORTHO05D009442 4.0e-32 143.3 108 62.0
Gorai.001G131400 Gossypium raimondii HOM05D007660 ORTHO05D009442 5.2e-32 142.9 107 62.6
QL09p017232 Quercus lobata HOM05D007660 ORTHO05D009442 5.2e-32 142.9 105 64.8
Sed0003873 Sechium edule HOM05D007660 ORTHO05D009442 8.9e-32 142.1 114 59.6
CANSAT80G0706 Cannabis sativa HOM05D007660 ORTHO05D009442 1.2e-31 141.7 114 60.5
CAN.G1375.15 Capsicum annuum HOM05D007660 ORTHO05D009442 1.2e-31 141.7 105 62.9
Glyma.06G093000 Glycine max HOM05D001083 ORTHO05D006562 1.5e-31 141.4 114 58.8
AUR62020133 Chenopodium quinoa HOM05D007660 ORTHO05D009442 2.6e-31 140.6 112 62.5
TWI56G0560 Tripterygium wilfordii HOM05D007660 ORTHO05D009442 4.4e-31 139.8 114 57.9
Psat5g045960 Pisum sativum HOM05D007660 ORTHO05D009442 5.8e-31 139.4 114 57.9
VMungo1309G0569 Vigna mungo HOM05D007660 ORTHO05D009442 9.9e-31 138.7 114 57.9
TPR.G26074 Trifolium pratense HOM05D007660 ORTHO05D009442 1.7e-30 137.9 114 56.1
TAR376G0278 Trochodendron aralioides HOM05D007660 ORTHO05D009442 1.7e-30 137.9 185 65.4
Ca_15991_v3 Cicer arietinum L. HOM05D001657 ORTHO05D001557 2.2e-30 137.5 109 59.6
Phvul.009G143500 Phaseolus vulgaris HOM05D007660 ORTHO05D009442 2.2e-30 137.5 114 56.1
Manes.03G106200 Manihot esculenta HOM05D007660 ORTHO05D009442 3.8e-30 136.7 111 57.7
Medtr3g100600 Medicago truncatula HOM05D007660 ORTHO05D009442 6.4e-30 136.0 114 56.1
AUR62001643 Chenopodium quinoa HOM05D007660 ORTHO05D009442 3.2e-29 133.7 109 60.6
THA.LOC104806823 Tarenaya hassleriana HOM05D007660 ORTHO05D009442 7.1e-29 132.5 108 59.3
Lalb_Chr23g0270081 Lupinus albus HOM05D007660 ORTHO05D009442 9.2e-29 132.1 102 62.7
SHI48801 Sapria himalayana HOM05D007660 ORTHO05D009442 2.3e-27 127.5 123 51.2
SHI48939 Sapria himalayana HOM05D007660 ORTHO05D009442 2.3e-27 127.5 123 51.2
Potri.002G103600 Populus trichocarpa HOM05D007660 ORTHO05D009442 1.5e-26 124.8 169 69.8
Sabra02G0081200 Salix brachista HOM05D006274 ORTHO05D007782 1.5e-26 124.8 120 53.3
Thhalv10001862m.g Eutrema salsugineum HOM05D007660 ORTHO05D009442 7.3e-26 122.5 108 53.7
CDE04G0843 Ceratophyllum demersum HOM05D007660 ORTHO05D009442 3.6e-25 120.2 107 51.4
Lj4g0004817 Lotus japonicus HOM05D007660 ORTHO05D009442 4.7e-25 119.8 98 57.1
PGR042G3094 Punica granatum HOM05D007660 ORTHO05D009442 4.7e-25 119.8 93 61.3
PSO675G1649 Papaver somniferum HOM05D007660 ORTHO05D009442 6.9e-24 115.9 96 57.3
FvH4_5g35730 Fragaria vesca HOM05D007660 ORTHO05D009442 2.6e-23 114.0 82 65.9
PSO541G1025 Papaver somniferum HOM05D007660 ORTHO05D009442 3.4e-23 113.6 97 55.7
ATR0022G052 Amborella trichopoda HOM05D007660 ORTHO05D009442 2.7e-20 104.0 102 50.0
Dinv42632 Davidia involucrata HOM05D007660 ORTHO05D009442 4.3e-18 96.7 185 57.8
Gohir.D07G121900 Gossypium hirsutum HOM05D007660 ORTHO05D009442 6.7e-11 72.8 130 70.8
TAR376G0931 Trochodendron aralioides HOM05D007660 ORTHO05D009442 8.7e-11 72.4 143 64.3
Gohir.A07G117500 Gossypium hirsutum HOM05D007660 ORTHO05D009442 2.8e-09 67.4 54 59.3
Sc17g0004280 Simmondsia chinensis HOM05D007155 ORTHO05D003034 1.2e-07 62.0 101 29.7
Os02g0468500 Oryza sativa ssp. japonica HOM05D007660 ORTHO05D009442 2.6e-07 60.8 89 41.6
Cfa019553 Carpinus fangiana HOM05D002453 ORTHO05D008746 1.3e-06 58.5 112 31.2
TWI38G0410 Tripterygium wilfordii HOM05D002453 ORTHO05D008746 1.3e-06 58.5 112 28.6
Ah.08g214900 Amaranthus hybridus HOM05D007197 ORTHO05D009064 1.7e-06 58.2 105 30.5
CAN.G1003.15 Capsicum annuum HOM05D007172 ORTHO05D009267 2.2e-06 57.8 119 26.9
BolC5t33948H Brassica oleracea HOM05D007085 ORTHO05D008828 6.4e-06 56.2 116 33.6
Lalb_Chr01g0006871 Lupinus albus HOM05D002453 ORTHO05D008746 6.4e-06 56.2 118 32.2
ATR0605G112 Amborella trichopoda HOM05D007085 ORTHO05D008828 8.4e-06 55.8 127 32.3
CiPaw.11G159300 Carya illinoinensis HOM05D002453 ORTHO05D008746 8.4e-06 55.8 112 31.2


User provided reference genes

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