Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 1.6e-52 209.1 107 100.0
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 2.6e-10 68.9 43 60.5
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 2.6e-10 68.9 43 60.5
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 2.6e-10 68.9 43 58.1
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 7.6e-10 67.4 44 54.5
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 7.6e-10 67.4 43 58.1
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 7.6e-10 67.4 38 60.5
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 7.6e-10 67.4 38 60.5
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 7.6e-10 67.4 38 60.5
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 7.6e-10 67.4 43 58.1
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.0e-09 67.0 44 54.5
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 1.0e-09 67.0 47 51.1
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 1.3e-09 66.6 42 54.8
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 1.7e-09 66.2 44 52.3
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 1.7e-09 66.2 43 55.8
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.9e-09 65.5 44 52.3
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.9e-09 65.5 44 52.3
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 2.9e-09 65.5 38 60.5
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 3.8e-09 65.1 70 40.0
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 6.5e-09 64.3 101 37.6
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 6.5e-09 64.3 43 55.8
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 8.4e-09 63.9 45 53.3
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 8.4e-09 63.9 45 53.3
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 8.4e-09 63.9 38 55.3
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 8.4e-09 63.9 44 50.0
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 8.4e-09 63.9 43 53.5
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 8.4e-09 63.9 43 55.8
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 8.4e-09 63.9 99 35.4
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 1.1e-08 63.5 65 43.1
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 1.4e-08 63.2 45 55.6
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 1.4e-08 63.2 45 55.6
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 1.4e-08 63.2 43 55.8
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.9e-08 62.8 60 40.0
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.5e-08 62.4 43 53.5
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.2e-08 62.0 91 36.3
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.2e-08 62.0 96 35.4
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 3.2e-08 62.0 96 35.4
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 3.2e-08 62.0 43 53.5
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 4.2e-08 61.6 44 52.3
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 4.2e-08 61.6 43 51.2
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 4.2e-08 61.6 58 43.1
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 4.2e-08 61.6 58 43.1
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 4.2e-08 61.6 43 53.5
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 4.2e-08 61.6 37 56.8
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 4.2e-08 61.6 43 58.1
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 5.5e-08 61.2 40 55.0
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 5.5e-08 61.2 102 38.2
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.5e-08 61.2 37 59.5
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 7.1e-08 60.8 45 53.3
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 7.1e-08 60.8 37 56.8
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 7.1e-08 60.8 38 57.9
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 9.3e-08 60.5 40 55.0
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 9.3e-08 60.5 37 54.1
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 9.3e-08 60.5 97 39.2
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 9.3e-08 60.5 41 56.1
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 1.2e-07 60.1 38 52.6
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 1.2e-07 60.1 45 53.3
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 1.2e-07 60.1 40 52.5
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.2e-07 60.1 37 51.4
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 1.6e-07 59.7 38 55.3
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 2.1e-07 59.3 43 51.2
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 2.1e-07 59.3 43 51.2
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 2.1e-07 59.3 42 47.6
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 2.1e-07 59.3 42 47.6
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 3.5e-07 58.5 44 50.0
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 3.5e-07 58.5 42 50.0
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 4.6e-07 58.2 40 57.5
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 4.6e-07 58.2 37 51.4
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 4.6e-07 58.2 44 50.0
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 6.0e-07 57.8 35 57.1
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 6.0e-07 57.8 42 50.0
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 7.9e-07 57.4 39 48.7
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 1.0e-06 57.0 40 47.5
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 1.0e-06 57.0 38 55.3
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 1.0e-06 57.0 55 38.2
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.0e-06 57.0 37 54.1
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 1.3e-06 56.6 65 43.1
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 1.3e-06 56.6 40 52.5
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 2.3e-06 55.8 56 41.1
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 2.3e-06 55.8 40 50.0
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 2.3e-06 55.8 41 48.8
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 2.3e-06 55.8 42 47.6
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 3.0e-06 55.5 90 35.6
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 3.0e-06 55.5 40 57.5
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 3.0e-06 55.5 37 51.4
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 3.9e-06 55.1 42 52.4
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 3.9e-06 55.1 38 50.0
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 5.1e-06 54.7 44 47.7
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 5.1e-06 54.7 44 47.7
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 6.7e-06 54.3 35 57.1
SalBow6G4181 Salvia bowleyana HOM05D061281 ORTHO05D008592 8.7e-06 53.9 39 51.3
SalBow6G4537 Salvia bowleyana HOM05D061281 ORTHO05D008592 8.7e-06 53.9 39 51.3


User provided reference genes

Program Settings