Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 9.1e-66 253.4 130 100.0
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 6.8e-37 157.5 122 69.7
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 1.7e-35 152.9 135 59.3
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 1.1e-34 150.2 115 65.2
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.9e-34 149.4 113 67.3
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 3.2e-34 148.7 116 64.7
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 5.4e-34 147.9 123 66.7
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 3.5e-33 145.2 115 67.0
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 4.6e-33 144.8 120 65.0
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 4.6e-33 144.8 119 67.2
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 1.3e-32 143.3 111 65.8
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.3e-32 143.3 123 61.0
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 2.3e-32 142.5 111 66.7
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 3.0e-32 142.1 120 64.2
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 5.1e-32 141.4 127 59.8
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 1.1e-31 140.2 119 65.5
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 1.1e-31 140.2 121 66.1
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 1.5e-31 139.8 115 64.3
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 1.5e-31 139.8 122 63.1
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 1.9e-31 139.4 117 63.2
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 2.5e-31 139.0 116 64.7
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 2.5e-31 139.0 116 66.4
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 4.3e-31 138.3 115 63.5
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 5.6e-31 137.9 122 64.8
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 7.3e-31 137.5 111 64.9
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 9.5e-31 137.1 123 63.4
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 9.5e-31 137.1 124 60.5
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 1.2e-30 136.7 118 61.0
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.2e-30 136.7 120 63.3
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.6e-30 136.3 116 63.8
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 1.6e-30 136.3 120 62.5
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 2.1e-30 136.0 120 65.8
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 2.1e-30 136.0 119 60.5
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 2.1e-30 136.0 119 60.5
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 2.1e-30 136.0 119 60.5
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.6e-30 135.2 80 80.0
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 3.6e-30 135.2 116 63.8
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 4.7e-30 134.8 123 59.3
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 6.2e-30 134.4 116 63.8
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 6.2e-30 134.4 117 63.2
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 8.1e-30 134.0 117 64.1
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 1.1e-29 133.7 115 58.3
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 1.1e-29 133.7 118 61.0
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 1.8e-29 132.9 121 59.5
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 1.8e-29 132.9 121 62.0
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.8e-29 132.9 121 62.0
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 1.8e-29 132.9 80 80.0
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 2.3e-29 132.5 81 79.0
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 2.3e-29 132.5 118 63.6
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 3.1e-29 132.1 121 61.2
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 3.1e-29 132.1 122 61.5
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 3.1e-29 132.1 119 61.3
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 4.0e-29 131.7 120 59.2
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 4.0e-29 131.7 120 59.2
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 4.0e-29 131.7 120 59.2
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 4.0e-29 131.7 121 61.2
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 4.0e-29 131.7 122 62.3
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 4.0e-29 131.7 121 62.8
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 4.0e-29 131.7 119 59.7
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 5.2e-29 131.3 118 58.5
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 5.2e-29 131.3 122 59.8
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 8.9e-29 130.6 115 59.1
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 8.9e-29 130.6 121 59.5
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 1.2e-28 130.2 94 68.1
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 1.2e-28 130.2 94 68.1
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 1.5e-28 129.8 121 62.0
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.5e-28 129.8 80 80.0
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.5e-28 129.8 119 62.2
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 2.0e-28 129.4 115 61.7
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 2.6e-28 129.0 116 60.3
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 2.6e-28 129.0 84 75.0
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.6e-28 129.0 138 54.3
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 2.6e-28 129.0 120 58.3
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 2.6e-28 129.0 119 62.2
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 3.4e-28 128.6 115 64.3
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 3.4e-28 128.6 121 58.7
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 4.4e-28 128.3 117 57.3
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 4.4e-28 128.3 114 62.3
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 5.8e-28 127.9 80 76.2
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 5.8e-28 127.9 116 59.5
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 5.8e-28 127.9 120 59.2
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 7.5e-28 127.5 121 59.5
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 7.5e-28 127.5 121 59.5
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 9.9e-28 127.1 117 59.8
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 9.9e-28 127.1 117 59.8
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 9.9e-28 127.1 118 58.5
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 9.9e-28 127.1 80 77.5
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 1.3e-27 126.7 114 62.3
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 1.7e-27 126.3 114 60.5
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 1.7e-27 126.3 114 61.4
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 1.7e-27 126.3 114 61.4
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 2.2e-27 125.9 120 57.5
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 2.2e-27 125.9 110 60.0
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 2.9e-27 125.6 83 74.7
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 2.9e-27 125.6 114 61.4
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 3.7e-27 125.2 126 54.8
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 3.7e-27 125.2 114 61.4
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 4.9e-27 124.8 118 55.9
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 4.9e-27 124.8 117 59.8
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 8.3e-27 124.0 116 61.2
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 1.1e-26 123.6 117 58.1
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 1.1e-26 123.6 114 60.5
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 1.9e-26 122.9 114 61.4
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 2.4e-26 122.5 112 57.1
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 4.1e-26 121.7 109 60.6
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 5.4e-26 121.3 114 61.4
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 5.4e-26 121.3 121 57.0
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 7.1e-26 120.9 73 76.7
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 9.2e-26 120.6 121 57.9
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 1.2e-25 120.2 75 73.3
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 2.1e-25 119.4 122 57.4
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 7.8e-25 117.5 152 50.0
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.7e-24 116.3 134 52.2
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.1e-23 113.6 74 68.9
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.3e-23 111.7 111 56.8
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 5.6e-23 111.3 97 59.8
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.6e-22 109.8 66 80.3
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 2.1e-22 109.4 64 78.1
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 2.8e-22 109.0 73 67.1
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 4.7e-22 108.2 99 59.6
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 1.5e-20 103.2 79 62.0
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 2.9e-19 99.0 97 57.7
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 1.1e-18 97.1 93 57.0
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 4.2e-18 95.1 59 71.2
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 4.2e-18 95.1 111 47.7
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 9.2e-18 94.0 71 62.0
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.2e-17 93.6 97 54.6
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 2.7e-17 92.4 81 54.3
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 3.5e-17 92.0 124 41.9
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 6.0e-17 91.3 51 84.3
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.9e-15 86.3 101 51.5
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 7.3e-15 84.3 82 54.9
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 1.1e-13 80.5 109 50.5
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 1.1e-13 80.5 42 85.7
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 4.0e-13 78.6 88 52.3
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.6e-12 75.9 139 38.8
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 5.6e-07 58.2 75 45.3
MCO09G323 Micromonas commoda HOM05D005845 ORTHO05D007067 9.6e-07 57.4 82 40.2


User provided reference genes

Program Settings