Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_028642 Daucus carota HOM05D000709 ORTHO05D028666 1.5e-20 101.7 43 100.0
Potri.006G152700 Populus trichocarpa HOM05D000709 ORTHO05D001136 1.5e-12 75.1 43 79.1
Gorai.010G078900 Gossypium raimondii HOM05D000709 ORTHO05D001136 4.3e-12 73.6 43 81.4
MD02G1068700 Malus domestica HOM05D000709 ORTHO05D001136 4.3e-12 73.6 43 74.4
Actinidia17503 Actinidia chinensis HOM05D000709 ORTHO05D001136 7.3e-12 72.8 43 79.1
Thecc.09G097300 Theobroma cacao HOM05D000709 ORTHO05D001136 9.5e-12 72.4 43 79.1
arahy.Tifrunner.gnm1.ann1.UX5JN7 Arachis hypogaea HOM05D000709 ORTHO05D001136 1.2e-11 72.0 43 79.1
MD15G1200200 Malus domestica HOM05D000709 ORTHO05D001136 1.6e-11 71.6 43 72.1
Lj2g0014687 Lotus japonicus HOM05D000709 ORTHO05D001136 2.1e-11 71.2 43 74.4
Atru.chr7.1496 Acer truncatum HOM05D000709 ORTHO05D001136 3.6e-11 70.5 43 76.7
MSTRG.10592 Avicennia marina HOM05D000709 ORTHO05D001136 3.6e-11 70.5 43 76.7
Cc06_g10730 Coffea canephora HOM05D000709 ORTHO05D001136 3.6e-11 70.5 43 76.7
Duzib168G0980 Durio zibethinus HOM05D000709 ORTHO05D001136 3.6e-11 70.5 43 76.7
Duzib187G1199 Durio zibethinus HOM05D000709 ORTHO05D001136 3.6e-11 70.5 43 76.7
Manes.03G028900 Manihot esculenta HOM05D000709 ORTHO05D001136 3.6e-11 70.5 43 76.7
CiPaw.04G154500 Carya illinoinensis HOM05D000709 ORTHO05D028666 4.7e-11 70.1 43 76.7
Eucgr.C00958 Eucalyptus grandis HOM05D000709 ORTHO05D001136 4.7e-11 70.1 44 77.3
Lj4A369T14 Lonicera japonica HOM05D000709 ORTHO05D001136 4.7e-11 70.1 43 76.7
GSVIVG01015274001 Vitis vinifera HOM05D000709 ORTHO05D001136 4.7e-11 70.1 43 76.7
Dinv42269 Davidia involucrata HOM05D000709 ORTHO05D001136 6.2e-11 69.7 43 76.7
QL02p040552 Quercus lobata HOM05D000709 ORTHO05D001136 6.2e-11 69.7 42 76.2
QL08p015114 Quercus lobata HOM05D000709 ORTHO05D001136 6.2e-11 69.7 42 76.2
arahy.Tifrunner.gnm1.ann1.T50ENK Arachis hypogaea HOM05D000709 ORTHO05D001136 1.1e-10 68.9 43 76.7
MSTRG.26398 Avicennia marina HOM05D000709 ORTHO05D001136 1.1e-10 68.9 43 74.4
Gohir.D05G028900 Gossypium hirsutum HOM05D000709 ORTHO05D001136 1.1e-10 68.9 43 76.7
Gorai.009G028900 Gossypium raimondii HOM05D000709 ORTHO05D001136 1.1e-10 68.9 43 76.7
CiPaw.03G221500 Carya illinoinensis HOM05D000709 ORTHO05D001136 1.4e-10 68.6 43 74.4
Oeu021461.1 Olea europaea HOM05D000709 ORTHO05D001136 1.4e-10 68.6 41 80.5
CSS0043027 Camellia sinensis var. sinensis HOM05D000709 ORTHO05D001136 1.8e-10 68.2 43 72.1
Manes.16G106800 Manihot esculenta HOM05D000709 ORTHO05D001136 1.8e-10 68.2 43 74.4
Medtr8g102240 Medicago truncatula HOM05D000709 ORTHO05D001136 1.8e-10 68.2 42 69.0
Phvul.004G174000 Phaseolus vulgaris HOM05D000709 ORTHO05D001136 1.8e-10 68.2 43 72.1
VMungo0464G2016 Vigna mungo HOM05D000709 ORTHO05D001136 1.8e-10 68.2 43 72.1
TAR624G0060 Trochodendron aralioides HOM05D000709 ORTHO05D001136 2.3e-10 67.8 43 76.7
Cfa003154 Carpinus fangiana HOM05D000709 ORTHO05D001136 3.1e-10 67.4 43 72.1
CSS0044968 Camellia sinensis var. sinensis HOM05D000709 ORTHO05D001136 4.0e-10 67.0 43 72.1
Prupe.7G217000 Prunus persica HOM05D000709 ORTHO05D001136 4.0e-10 67.0 43 69.8
Glyma.01G005500 Glycine max HOM05D000709 ORTHO05D001136 5.2e-10 66.6 43 72.1
Oeu000340.1 Olea europaea HOM05D000709 ORTHO05D001136 6.8e-10 66.2 43 72.1
Gohir.A05G027000 Gossypium hirsutum HOM05D000709 ORTHO05D001136 8.9e-10 65.9 43 76.7
EL10Ac8g18350 Beta vulgaris HOM05D000709 ORTHO05D001136 1.2e-09 65.5 47 70.2
PGR142G2852 Punica granatum HOM05D000709 ORTHO05D001136 1.5e-09 65.1 43 69.8
Aqoxy7G01369 Aquilegia oxysepala HOM05D000709 ORTHO05D001136 2.0e-09 64.7 44 77.3
Migut.K00558 Erythranthe guttata HOM05D000709 ORTHO05D001136 2.0e-09 64.7 43 67.4
TWI32G0647 Tripterygium wilfordii HOM05D000709 ORTHO05D001136 2.0e-09 64.7 43 69.8
Glyma.07G126500 Glycine max HOM05D000709 ORTHO05D001136 2.6e-09 64.3 43 74.4
TPR.G23500 Trifolium pratense HOM05D000709 ORTHO05D001136 2.6e-09 64.3 43 69.8
HanXRQChr10g0318961 Helianthus annuus HOM05D000709 ORTHO05D001136 3.4e-09 63.9 42 71.4
Lsat_1_v5_gn_5_146440 Lactuca sativa HOM05D000709 ORTHO05D001136 3.4e-09 63.9 42 71.4
Ca_17376_v3 Cicer arietinum L. HOM05D000709 ORTHO05D001136 4.4e-09 63.5 44 70.5
Duzib150G0331 Durio zibethinus HOM05D000709 ORTHO05D001136 4.4e-09 63.5 43 76.7
FAN23G2270 Fragaria x ananassa HOM05D000709 ORTHO05D001136 4.4e-09 63.5 44 68.2
Nn8g39021 Nelumbo nucifera HOM05D000709 ORTHO05D001136 4.4e-09 63.5 43 74.4
Cpa.g.sc78.40 Carica papaya HOM05D000709 ORTHO05D001136 5.8e-09 63.2 43 72.1
CDE05G0338 Ceratophyllum demersum HOM05D000709 ORTHO05D001136 5.8e-09 63.2 43 67.4
Potri.018G068700 Populus trichocarpa HOM05D000709 ORTHO05D001136 5.8e-09 63.2 43 67.4
CAN.G44.8 Capsicum annuum HOM05D000709 ORTHO05D001136 7.6e-09 62.8 43 69.8
ECA234G2604 Erigeron canadensis HOM05D000709 ORTHO05D001136 7.6e-09 62.8 42 71.4
HanXRQChr12g0355191 Helianthus annuus HOM05D000709 ORTHO05D001136 7.6e-09 62.8 42 71.4
Sopen05g022420 Solanum pennellii HOM05D000709 ORTHO05D001136 7.6e-09 62.8 43 69.8
PGSC0003DMG400016896 Solanum tuberosum HOM05D000709 ORTHO05D001136 7.6e-09 62.8 43 69.8
Actinidia39768 Actinidia chinensis HOM05D000709 ORTHO05D001136 9.9e-09 62.4 43 69.8
Glyma.05G225100 Glycine max HOM05D000709 ORTHO05D001136 1.3e-08 62.0 40 67.5
Hund09072 Selenicereus undatus HOM05D000709 ORTHO05D001136 1.3e-08 62.0 46 67.4
Hma1.2p1_0012F.1_g007490 Hydrangea macrophylla HOM05D000709 ORTHO05D001136 1.7e-08 61.6 32 81.2
Hma1.2p1_2337F.1_g320223 Hydrangea macrophylla HOM05D000709 ORTHO05D001136 1.7e-08 61.6 32 81.2
Phvul.002G307000 Phaseolus vulgaris HOM05D000709 ORTHO05D001136 1.7e-08 61.6 40 70.0
HanXRQChr09g0238471 Helianthus annuus HOM05D000709 ORTHO05D001136 2.2e-08 61.2 42 66.7
SGA_v2.0_scaffold19G08697 Striga asiatica HOM05D000709 ORTHO05D001136 2.2e-08 61.2 42 66.7
CDE05G1113 Ceratophyllum demersum HOM05D000709 ORTHO05D001136 2.9e-08 60.8 43 65.1
Nn6g35359 Nelumbo nucifera HOM05D000709 ORTHO05D001136 4.9e-08 60.1 43 72.1
Rhsim05G0029200 Rhododendron simsii HOM05D000709 ORTHO05D001136 4.9e-08 60.1 36 75.0
Thhalv10024980m.g Eutrema salsugineum HOM05D000709 ORTHO05D001136 6.4e-08 59.7 48 62.5
VMungo0251G2927 Vigna mungo HOM05D000709 ORTHO05D001136 6.4e-08 59.7 41 65.9
AL7G23230 Arabidopsis lyrata HOM05D000709 ORTHO05D001136 8.4e-08 59.3 48 62.5
CARHR236990 Cardamine hirsuta HOM05D000709 ORTHO05D001136 1.1e-07 58.9 48 62.5
Nitab4.5_0003873g0010 Nicotiana tabacum HOM05D000709 ORTHO05D001136 1.1e-07 58.9 42 66.7
AT4G29230 Arabidopsis thaliana HOM05D000709 ORTHO05D001136 1.4e-07 58.5 48 62.5
A03p58850 Brassica napus HOM05D000709 ORTHO05D001136 1.4e-07 58.5 48 62.5
C07p56800 Brassica napus HOM05D000709 ORTHO05D001136 1.4e-07 58.5 48 62.5
BraA03t14945Z Brassica rapa HOM05D000709 ORTHO05D001136 1.4e-07 58.5 48 62.5
Carub.0007s1137 Capsella rubella HOM05D000709 ORTHO05D001136 1.4e-07 58.5 48 62.5
Sabra06G0120900 Salix brachista HOM05D000709 ORTHO05D001136 1.4e-07 58.5 54 57.4
Lalb_Chr24g0394001 Lupinus albus HOM05D000709 ORTHO05D001136 1.9e-07 58.2 45 64.4
PSO063G2788 Papaver somniferum HOM05D000709 ORTHO05D001136 1.9e-07 58.2 42 69.0
MBI01_g10301_MAGBIO Magnolia biondii HOM05D000709 ORTHO05D001136 3.2e-07 57.4 43 65.1
TWI34G1480 Tripterygium wilfordii HOM05D000709 ORTHO05D001136 3.2e-07 57.4 46 63.0
TWI63G1695 Tripterygium wilfordii HOM05D000709 ORTHO05D001136 5.4e-07 56.6 45 64.4
BcaNung00470 Brassica carinata HOM05D000709 ORTHO05D001136 9.2e-07 55.8 48 60.4
Haze_25848 Corylus avellana HOM05D000709 ORTHO05D001136 9.2e-07 55.8 32 75.0
DCAR_012021 Daucus carota HOM05D000709 ORTHO05D001136 1.2e-06 55.5 34 67.6
THA.LOC104803997 Tarenaya hassleriana HOM05D000709 ORTHO05D001136 1.6e-06 55.1 47 57.4
Aa31LG2G21210 Aethionema arabicum HOM05D000709 ORTHO05D001136 2.7e-06 54.3 49 57.1
ClCG11G001970 Citrullus lanatus HOM05D000709 ORTHO05D001136 2.7e-06 54.3 43 67.4
HanXRQChr03g0060931 Helianthus annuus HOM05D000709 ORTHO05D001136 2.7e-06 54.3 43 67.4
Lalb_Chr14g0375201 Lupinus albus HOM05D000709 ORTHO05D001136 2.7e-06 54.3 45 66.7
vmacro10833 Vaccinium macrocarpon HOM05D000709 ORTHO05D001136 2.7e-06 54.3 36 69.4
FvH4_1g06530 Fragaria vesca HOM05D000709 ORTHO05D001136 3.5e-06 53.9 33 66.7
FAN19G1326 Fragaria x ananassa HOM05D000709 ORTHO05D001136 3.5e-06 53.9 33 66.7
FAN26G1548 Fragaria x ananassa HOM05D000709 ORTHO05D001136 3.5e-06 53.9 33 66.7
FAN26G2203 Fragaria x ananassa HOM05D000709 ORTHO05D001136 3.5e-06 53.9 33 66.7
RcHm_v2.0_Chr2g0092281 Rosa chinensis HOM05D000709 ORTHO05D001136 3.5e-06 53.9 33 66.7
PSO832G3704 Papaver somniferum HOM05D000709 ORTHO05D001136 4.6e-06 53.5 43 67.4
SalBow1G2586 Salvia bowleyana HOM05D000709 ORTHO05D001136 4.6e-06 53.5 32 71.9
BcaC09g51710 Brassica carinata HOM05D000709 ORTHO05D001136 7.8e-06 52.8 49 59.2
C01p10310 Brassica napus HOM05D000709 ORTHO05D001136 7.8e-06 52.8 49 59.2
BolC1t00987H Brassica oleracea HOM05D000709 ORTHO05D001136 7.8e-06 52.8 49 59.2
Sed0023781 Sechium edule HOM05D000709 ORTHO05D001136 7.8e-06 52.8 43 65.1
TAR626G0326 Trochodendron aralioides HOM05D000709 ORTHO05D001136 7.8e-06 52.8 43 58.1
unitig_0.g2541 Utricularia gibba HOM05D000709 ORTHO05D028666 7.8e-06 52.8 62 50.0


User provided reference genes

Program Settings