Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_028606 Daucus carota HOM05D020440 ORTHO05D006349 5.4e-167 590.9 293 100.0
DCAR_001019 Daucus carota HOM05D020440 ORTHO05D006349 1.3e-152 543.1 346 82.1
DCAR_005483 Daucus carota HOM05D020440 ORTHO05D006349 6.5e-136 487.6 342 76.6
DCAR_025080 Daucus carota HOM05D020440 ORTHO05D176877 5.8e-44 182.2 143 70.6
DCAR_028301 Daucus carota HOM05D020440 ORTHO05D177073 6.4e-43 178.7 141 70.9
DCAR_005060 Daucus carota HOM05D017553 ORTHO05D010791 3.8e-27 126.3 108 55.6
DCAR_024275 Daucus carota HOM05D017553 ORTHO05D006349 2.5e-15 87.0 95 50.5
DCAR_002019 Daucus carota HOM05D020440 ORTHO05D177266 4.1e-13 79.7 82 50.0
DCAR_022708 Daucus carota HOM05D010862 ORTHO05D010791 7.7e-12 75.5 83 49.4
DCAR_024114 Daucus carota HOM05D002069 ORTHO05D001421 1.3e-11 74.7 88 42.0
Cc01_g06810 Coffea canephora HOM05D006374 ORTHO05D006349 2.9e-11 73.6 66 43.9
Cc01_g06860 Coffea canephora HOM05D006374 ORTHO05D006349 8.5e-11 72.0 66 42.4
Hund05647 Selenicereus undatus HOM05D006374 ORTHO05D006349 1.4e-10 71.2 72 41.7
VMungo1309G0655 Vigna mungo HOM05D006374 ORTHO05D006349 1.4e-10 71.2 81 43.2
Oeu025935.3 Olea europaea HOM05D001292 ORTHO05D006349 3.2e-10 70.1 79 38.0
MSTRG.20819 Avicennia marina HOM05D006374 ORTHO05D006349 4.2e-10 69.7 61 47.5
ECA232G1265 Erigeron canadensis HOM05D006374 ORTHO05D006349 4.2e-10 69.7 81 38.3
Solyc11g072220.2 Solanum lycopersicum HOM05D006374 ORTHO05D006349 5.5e-10 69.3 98 35.7
Sopen11g029890 Solanum pennellii HOM05D006374 ORTHO05D006349 5.5e-10 69.3 98 35.7
Lsat_1_v5_gn_9_14500 Lactuca sativa HOM05D006374 ORTHO05D006349 7.2e-10 68.9 59 45.8
Nn4g22459 Nelumbo nucifera HOM05D006374 ORTHO05D006349 9.4e-10 68.6 59 47.5
Lsat_1_v5_gn_4_76860 Lactuca sativa HOM05D006374 ORTHO05D006349 1.6e-09 67.8 59 45.8
Dinv11161 Davidia involucrata HOM05D006374 ORTHO05D006349 2.1e-09 67.4 59 47.5
DCAR_005456 Daucus carota HOM05D014044 ORTHO05D006349 3.6e-09 66.6 100 29.0
PSO339G4060 Papaver somniferum HOM05D006374 ORTHO05D006349 3.6e-09 66.6 57 45.6
Sopen02g012480 Solanum pennellii HOM05D006374 ORTHO05D006349 3.6e-09 66.6 102 32.4
EL10Ac3g05470 Beta vulgaris HOM05D006374 ORTHO05D006349 4.7e-09 66.2 100 34.0
HanXRQChr16g0497711 Helianthus annuus HOM05D006374 ORTHO05D006349 4.7e-09 66.2 59 44.1
Nitab4.5_0000205g0050 Nicotiana tabacum HOM05D006374 ORTHO05D006349 4.7e-09 66.2 96 35.4
DCAR_029290 Daucus carota HOM05D014044 ORTHO05D006349 6.1e-09 65.9 100 29.0
DCAR_030060 Daucus carota HOM05D014044 ORTHO05D015632 6.1e-09 65.9 98 29.6
Migut.D00697 Erythranthe guttata HOM05D006374 ORTHO05D006349 6.1e-09 65.9 57 43.9
Phvul.009G168700 Phaseolus vulgaris HOM05D006374 ORTHO05D006349 6.1e-09 65.9 63 46.0
PGSC0003DMG400027413 Solanum tuberosum HOM05D006374 ORTHO05D006349 6.1e-09 65.9 98 33.7
DCAR_017413 Daucus carota HOM05D014044 ORTHO05D006349 7.9e-09 65.5 100 28.0
Nitab4.5_0003471g0010 Nicotiana tabacum HOM05D006374 ORTHO05D006349 7.9e-09 65.5 93 36.6
CAN.G328.5 Capsicum annuum HOM05D006374 ORTHO05D006349 1.0e-08 65.1 59 45.8
Glyma.04G193100 Glycine max HOM05D006374 ORTHO05D006349 1.0e-08 65.1 58 50.0
Peaxi162Scf00234g00413 Petunia axillaris HOM05D006374 ORTHO05D006349 1.0e-08 65.1 59 44.1
Nitab4.5_0004577g0040 Nicotiana tabacum HOM05D006374 ORTHO05D006349 1.4e-08 64.7 59 44.1
PGSC0003DMG401023161 Solanum tuberosum HOM05D006374 ORTHO05D006349 1.4e-08 64.7 59 44.1
PGSC0003DMG402023161 Solanum tuberosum HOM05D006374 ORTHO05D006349 1.4e-08 64.7 59 44.1
Hund23135 Selenicereus undatus HOM05D006374 ORTHO05D006349 1.8e-08 64.3 82 39.0
DCAR_026222 Daucus carota HOM05D001045 ORTHO05D001542 2.3e-08 63.9 78 37.2
Psat5g141920 Pisum sativum HOM05D006374 ORTHO05D006349 2.3e-08 63.9 63 44.4
PSO339G5603 Papaver somniferum HOM05D006374 ORTHO05D006349 3.0e-08 63.5 64 37.5
arahy.Tifrunner.gnm1.ann1.EEZ80W Arachis hypogaea HOM05D006374 ORTHO05D006349 3.9e-08 63.2 64 45.3
arahy.Tifrunner.gnm1.ann1.RTUG1E Arachis hypogaea HOM05D006374 ORTHO05D006349 3.9e-08 63.2 63 46.0
arahy.Tifrunner.gnm1.ann1.6C93RA Arachis hypogaea HOM05D006374 ORTHO05D006349 5.1e-08 62.8 68 44.1
PSO384G0777 Papaver somniferum HOM05D006374 ORTHO05D006349 5.1e-08 62.8 64 39.1
Cfa018891 Carpinus fangiana HOM05D006374 ORTHO05D006349 6.7e-08 62.4 59 45.8
DCAR_024113 Daucus carota HOM05D006374 ORTHO05D006349 6.7e-08 62.4 69 43.5
MD14G1163400 Malus domestica HOM05D006374 ORTHO05D006349 6.7e-08 62.4 80 41.2
Prupe.5G156800 Prunus persica HOM05D006374 ORTHO05D006349 6.7e-08 62.4 98 35.7
MSTRG.18477 Avicennia marina HOM05D006374 ORTHO05D006349 1.5e-07 61.2 59 40.7
Eucgr.B00120 Eucalyptus grandis HOM05D006374 ORTHO05D006349 1.5e-07 61.2 59 42.4
Medtr3g075090 Medicago truncatula HOM05D006374 ORTHO05D006349 1.5e-07 61.2 65 41.5
Lj1g0028093 Lotus japonicus HOM05D006374 ORTHO05D006349 2.6e-07 60.5 82 40.2
Thhalv10010584m.g Eutrema salsugineum HOM05D006374 ORTHO05D006349 3.3e-07 60.1 61 42.6
Gohir.A07G051500 Gossypium hirsutum HOM05D006374 ORTHO05D006349 3.3e-07 60.1 59 42.4
Duzib205G1366 Durio zibethinus HOM05D006374 ORTHO05D006349 4.4e-07 59.7 59 39.0
RcHm_v2.0_Chr7g0191071 Rosa chinensis HOM05D006374 ORTHO05D006349 5.7e-07 59.3 59 45.8
AUR62017054 Chenopodium quinoa HOM05D006374 ORTHO05D006349 7.4e-07 58.9 59 40.7
Migut.B01731 Erythranthe guttata HOM05D006374 ORTHO05D006349 7.4e-07 58.9 61 41.0
Gohir.D07G055900 Gossypium hirsutum HOM05D006374 ORTHO05D006349 7.4e-07 58.9 59 42.4
Ca_16088_v3 Cicer arietinum L. HOM05D006374 ORTHO05D006349 9.7e-07 58.5 58 46.6
FAN08G0738 Fragaria x ananassa HOM05D006374 ORTHO05D006349 1.3e-06 58.2 59 42.4
Manes.14G055266 Manihot esculenta HOM05D006374 ORTHO05D006349 1.3e-06 58.2 59 42.4
AUR62040664 Chenopodium quinoa HOM05D006374 ORTHO05D006349 1.7e-06 57.8 59 40.7
AUR62044358 Chenopodium quinoa HOM05D006374 ORTHO05D006349 1.7e-06 57.8 59 40.7
Gohir.D13G208100 Gossypium hirsutum HOM05D006374 ORTHO05D006349 1.7e-06 57.8 99 34.3
Gorai.013G237200 Gossypium raimondii HOM05D006374 ORTHO05D006349 1.7e-06 57.8 99 34.3
AUR62041753 Chenopodium quinoa HOM05D006374 ORTHO05D006349 2.2e-06 57.4 72 37.5
FvH4_3g25530 Fragaria vesca HOM05D006374 ORTHO05D006349 2.2e-06 57.4 59 42.4
Sp5g13550 Schrenkiella parvula HOM05D006374 ORTHO05D006349 2.2e-06 57.4 61 39.3
AL5G27890 Arabidopsis lyrata HOM05D006374 ORTHO05D006349 2.8e-06 57.0 66 36.4
TWI18G0954 Tripterygium wilfordii HOM05D006374 ORTHO05D006349 2.8e-06 57.0 66 36.4
TWI63G0087 Tripterygium wilfordii HOM05D006374 ORTHO05D006349 2.8e-06 57.0 66 36.4
EL10Ac4g07621 Beta vulgaris HOM05D006374 ORTHO05D006349 3.7e-06 56.6 76 34.2
DCAR_015986 Daucus carota HOM05D008184 ORTHO05D010791 3.7e-06 56.6 75 38.7
DCAR_018007 Daucus carota HOM05D001292 ORTHO05D006349 3.7e-06 56.6 75 38.7
FvH4_5g07530 Fragaria vesca HOM05D006374 ORTHO05D006349 3.7e-06 56.6 59 40.7
FAN04G3207 Fragaria x ananassa HOM05D006374 ORTHO05D006349 3.7e-06 56.6 59 40.7
FAN18G3707 Fragaria x ananassa HOM05D006374 ORTHO05D006349 3.7e-06 56.6 59 40.7
Gohir.A13G202800 Gossypium hirsutum HOM05D006374 ORTHO05D006349 3.7e-06 56.6 99 34.3
ATR0824G075 Amborella trichopoda HOM05D001292 ORTHO05D006349 4.8e-06 56.2 59 39.0
DCAR_030104 Daucus carota HOM05D014044 ORTHO05D006349 8.2e-06 55.5 128 28.1
PSO384G4638 Papaver somniferum HOM05D006374 ORTHO05D006349 8.2e-06 55.5 50 44.0


User provided reference genes

Program Settings