Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_028445 Daucus carota HOM05D006244 ORTHO05D007401 1.0e-162 576.6 285 100.0
Manes.04G043800 Manihot esculenta HOM05D006244 ORTHO05D007401 6.0e-78 295.0 269 56.1
QL05p011148 Quercus lobata HOM05D006244 ORTHO05D007401 1.6e-75 287.0 269 54.6
QL10p050150 Quercus lobata HOM05D006244 ORTHO05D007401 3.6e-75 285.8 269 54.6
Ciclev10021382m.g Citrus clementina HOM05D006244 ORTHO05D007401 1.1e-74 284.3 246 58.1
Dinv22748 Davidia involucrata HOM05D006244 ORTHO05D007401 4.0e-74 282.3 240 60.0
CSS0032343 Camellia sinensis var. sinensis HOM05D006244 ORTHO05D007401 4.4e-73 278.9 269 53.2
Actinidia11297 Actinidia chinensis HOM05D006244 ORTHO05D007401 5.8e-73 278.5 267 52.4
Atru.chr4.1240 Acer truncatum HOM05D006244 ORTHO05D007401 4.9e-72 275.4 255 55.7
Hma1.2p1_0324F.1_g125510 Hydrangea macrophylla HOM05D006244 ORTHO05D007401 6.4e-72 275.0 240 57.5
Potri.017G028900 Populus trichocarpa HOM05D006244 ORTHO05D007401 3.2e-71 272.7 269 52.8
CANSAT78G1025 Cannabis sativa HOM05D006244 ORTHO05D007401 9.3e-71 271.2 269 52.0
TAR636G2962 Trochodendron aralioides HOM05D006244 ORTHO05D007401 2.1e-70 270.0 269 51.7
Cfa020094 Carpinus fangiana HOM05D006244 ORTHO05D007401 2.7e-70 269.6 269 52.8
Sabra17G0017500 Salix brachista HOM05D006244 ORTHO05D007401 4.6e-70 268.9 261 52.9
Cpa.g.sc9.298 Carica papaya HOM05D006244 ORTHO05D007401 1.9e-68 263.5 258 51.9
Gorai.011G141500 Gossypium raimondii HOM05D006244 ORTHO05D007401 9.6e-68 261.2 270 50.0
ECA248G0275 Erigeron canadensis HOM05D006244 ORTHO05D007401 3.6e-67 259.2 248 52.8
Gohir.D10G128300 Gossypium hirsutum HOM05D006244 ORTHO05D007401 4.8e-67 258.8 270 49.6
Duzib175G0007 Durio zibethinus HOM05D006244 ORTHO05D007401 8.1e-67 258.1 276 50.4
RcHm_v2.0_Chr4g0406631 Rosa chinensis HOM05D006244 ORTHO05D007401 8.1e-67 258.1 271 49.4
CiPaw.02G053900 Carya illinoinensis HOM05D006244 ORTHO05D007401 1.1e-66 257.7 269 50.6
Duzib151G0743 Durio zibethinus HOM05D006244 ORTHO05D007401 1.1e-66 257.7 276 50.4
Eucgr.H00368 Eucalyptus grandis HOM05D006244 ORTHO05D007401 1.4e-66 257.3 266 50.4
CsaV3_3G040880 Cucumis sativus L. HOM05D006244 ORTHO05D007401 4.0e-66 255.8 269 50.2
Lalb_Chr22g0352091 Lupinus albus HOM05D006244 ORTHO05D007401 5.3e-66 255.4 270 48.9
Lsat_1_v5_gn_1_77900 Lactuca sativa HOM05D006244 ORTHO05D007401 6.9e-66 255.0 242 52.5
MELO3C009823.2 Cucumis melo HOM05D006244 ORTHO05D007401 2.6e-65 253.1 269 49.8
FAN07G2433 Fragaria x ananassa HOM05D006244 ORTHO05D007401 2.6e-65 253.1 271 49.1
TWI38G0370 Tripterygium wilfordii HOM05D006244 ORTHO05D007401 3.4e-65 252.7 258 51.9
GSVIVG01010791001 Vitis vinifera HOM05D006244 ORTHO05D007401 9.9e-65 251.1 269 50.9
ClCG10G015550 Citrullus lanatus HOM05D006244 ORTHO05D007401 1.3e-64 250.8 269 49.1
Prupe.1G196900 Prunus persica HOM05D006244 ORTHO05D007401 2.2e-64 250.0 269 47.2
PSO732G0675 Papaver somniferum HOM05D006244 ORTHO05D007401 4.9e-64 248.8 250 50.8
MSTRG.9759 Avicennia marina HOM05D006244 ORTHO05D007401 6.4e-64 248.4 268 48.5
SalBow3G2237 Salvia bowleyana HOM05D006244 ORTHO05D007401 6.4e-64 248.4 245 51.4
arahy.Tifrunner.gnm1.ann1.IE55HN Arachis hypogaea HOM05D006244 ORTHO05D007401 1.1e-63 247.7 285 46.0
FvH4_4g10850 Fragaria vesca HOM05D006244 ORTHO05D007401 1.1e-63 247.7 269 48.7
FAN12G2117 Fragaria x ananassa HOM05D006244 ORTHO05D007401 1.1e-63 247.7 269 48.7
MD04G1042500 Malus domestica HOM05D006244 ORTHO05D007401 1.9e-63 246.9 269 48.3
PGSC0003DMG400022864 Solanum tuberosum HOM05D006244 ORTHO05D007401 1.9e-63 246.9 250 50.8
arahy.Tifrunner.gnm1.ann1.LPC3IP Arachis hypogaea HOM05D006244 ORTHO05D007401 2.4e-63 246.5 284 45.8
PSO675G8539 Papaver somniferum HOM05D006244 ORTHO05D007401 2.4e-63 246.5 260 50.0
Gohir.A10G138500 Gossypium hirsutum HOM05D006244 ORTHO05D007401 3.2e-63 246.1 245 51.0
Rhsim09G0025200 Rhododendron simsii HOM05D006244 ORTHO05D007401 3.2e-63 246.1 305 45.2
Sopen11g020640 Solanum pennellii HOM05D006244 ORTHO05D007401 4.2e-63 245.7 250 50.8
Solyc11g045210.2 Solanum lycopersicum HOM05D006244 ORTHO05D007401 5.4e-63 245.4 250 50.4
Aqoxy2G04144 Aquilegia oxysepala HOM05D006244 ORTHO05D007401 9.3e-63 244.6 243 50.2
HanXRQChr11g0343701 Helianthus annuus HOM05D006244 ORTHO05D007401 9.3e-63 244.6 268 47.8
CAN.G31.8 Capsicum annuum HOM05D006244 ORTHO05D007401 1.6e-62 243.8 250 51.2
Hund03170 Selenicereus undatus HOM05D006244 ORTHO05D007401 1.6e-62 243.8 245 51.8
COL.COLO4_12977 Corchorus olitorius HOM05D006244 ORTHO05D007401 2.7e-62 243.0 293 45.4
Lj3g0008901 Lotus japonicus HOM05D006244 ORTHO05D007401 7.9e-62 241.5 245 49.8
Sc19g0002910 Simmondsia chinensis HOM05D006244 ORTHO05D007401 1.0e-61 241.1 248 49.6
Actinidia27645 Actinidia chinensis HOM05D006244 ORTHO05D007401 1.3e-61 240.7 215 55.3
THA.LOC104803749 Tarenaya hassleriana HOM05D006244 ORTHO05D007401 1.8e-61 240.4 268 48.1
Migut.G01000 Erythranthe guttata HOM05D006244 ORTHO05D007401 1.5e-60 237.3 266 47.4
Nitab4.5_0004117g0020 Nicotiana tabacum HOM05D006244 ORTHO05D007401 1.5e-60 237.3 248 50.0
AT3G59490 Arabidopsis thaliana HOM05D006244 ORTHO05D007401 2.5e-60 236.5 242 49.2
Cc07_g21300 Coffea canephora HOM05D006244 ORTHO05D007401 2.5e-60 236.5 242 49.6
MBI08_g33169_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 3.3e-60 236.1 279 47.7
AUR62023861 Chenopodium quinoa HOM05D006244 ORTHO05D007401 4.3e-60 235.7 245 50.2
Carub.0005s2622 Capsella rubella HOM05D006244 ORTHO05D007401 5.6e-60 235.3 240 50.0
PGR142G0422 Punica granatum HOM05D006244 ORTHO05D007401 5.6e-60 235.3 235 55.3
Nitab4.5_0008822g0040 Nicotiana tabacum HOM05D006244 ORTHO05D007401 7.4e-60 235.0 248 49.6
EL10Ac3g05981 Beta vulgaris HOM05D006244 ORTHO05D007401 9.6e-60 234.6 245 48.2
Thhalv10006132m.g Eutrema salsugineum HOM05D006244 ORTHO05D007401 1.3e-59 234.2 256 46.9
Sp5g03670 Schrenkiella parvula HOM05D006244 ORTHO05D007401 2.1e-59 233.4 256 46.9
CARHR169870 Cardamine hirsuta HOM05D006244 ORTHO05D007401 2.8e-59 233.0 254 47.6
Peaxi162Scf00126g00623 Petunia axillaris HOM05D006244 ORTHO05D007401 6.2e-59 231.9 250 48.0
Thecc.04G177000 Theobroma cacao HOM05D006244 ORTHO05D007401 6.2e-59 231.9 230 50.9
Ah.07g202200 Amaranthus hybridus HOM05D006244 ORTHO05D007401 8.1e-59 231.5 244 48.8
BraA04t15944Z Brassica rapa HOM05D006244 ORTHO05D007401 1.1e-58 231.1 254 47.2
Glyma.15G029700 Glycine max HOM05D006244 ORTHO05D007401 4.0e-58 229.2 268 45.5
ATR0743G009 Amborella trichopoda HOM05D006244 ORTHO05D007401 2.6e-57 226.5 254 46.1
unitig_0.g2404 Utricularia gibba HOM05D006244 ORTHO05D007401 4.5e-57 225.7 266 44.7
Aa31LG10G13810 Aethionema arabicum HOM05D006244 ORTHO05D007401 7.6e-57 224.9 265 46.4
C08p34500 Brassica napus HOM05D006244 ORTHO05D007401 1.7e-56 223.8 262 44.7
BolC8t51051H Brassica oleracea HOM05D006244 ORTHO05D007401 1.7e-56 223.8 262 44.7
A04p02170 Brassica napus HOM05D006244 ORTHO05D007401 2.2e-56 223.4 265 45.3
VMungo1080G0762 Vigna mungo HOM05D006244 ORTHO05D007401 3.8e-56 222.6 244 48.8
BcaC07g40479 Brassica carinata HOM05D006244 ORTHO05D007401 1.1e-55 221.1 262 45.4
HPP92_001264 Vanilla planifolia HOM05D006244 ORTHO05D007401 1.1e-55 221.1 256 46.5
Sed0026513 Sechium edule HOM05D006244 ORTHO05D007401 1.9e-55 220.3 229 51.5
HPP92_001248 Vanilla planifolia HOM05D006244 ORTHO05D007401 1.9e-55 220.3 256 46.5
AL5G41400 Arabidopsis lyrata HOM05D006244 ORTHO05D007401 2.5e-55 219.9 242 47.5
BcaC07g40478 Brassica carinata HOM05D006244 ORTHO05D007401 2.5e-55 219.9 231 48.1
A09p51770 Brassica napus HOM05D006244 ORTHO05D007401 3.2e-55 219.5 262 44.3
AUR62002326 Chenopodium quinoa HOM05D006244 ORTHO05D007401 3.2e-55 219.5 245 48.2
Psat5g289400 Pisum sativum HOM05D006244 ORTHO05D007401 1.2e-54 217.6 266 44.0
TPR.G18836 Trifolium pratense HOM05D006244 ORTHO05D007401 1.2e-54 217.6 269 43.1
Medtr2g098960 Medicago truncatula HOM05D006244 ORTHO05D007401 7.9e-54 214.9 266 42.9
BcaB02g08221 Brassica carinata HOM05D006244 ORTHO05D007401 1.3e-53 214.2 230 49.1
BcaNung05942 Brassica carinata HOM05D006244 ORTHO05D007401 1.8e-53 213.8 255 46.3
BraA09t40612Z Brassica rapa HOM05D006244 ORTHO05D007401 2.5e-52 209.9 227 46.3
vmacro00644 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 1.1e-50 204.5 197 53.3
C04p33420 Brassica napus HOM05D006244 ORTHO05D007401 6.7e-45 185.3 240 45.0
Lju337A6T20 Lonicera japonica HOM05D006244 ORTHO05D007401 1.1e-44 184.5 172 57.6
BolC4t24903H Brassica oleracea HOM05D006244 ORTHO05D007401 1.5e-44 184.1 254 41.3
FAN17G1708 Fragaria x ananassa HOM05D006244 ORTHO05D007401 1.9e-44 183.7 196 49.0
Zm00001eb318410 Zea mays HOM05D006244 ORTHO05D007401 9.7e-44 181.4 254 40.9
Cfa015178 Carpinus fangiana HOM05D006244 ORTHO05D007401 3.1e-42 176.4 173 55.5
Nn3g18564 Nelumbo nucifera HOM05D006244 ORTHO05D007401 9.0e-42 174.9 258 37.2
Phvul.005G153400 Phaseolus vulgaris HOM05D006244 ORTHO05D007401 5.0e-40 169.1 197 46.7
C04p32460 Brassica napus HOM05D006244 ORTHO05D007401 1.4e-23 114.4 159 41.5
Os09g0515300 Oryza sativa ssp. japonica HOM05D006244 ORTHO05D007401 4.2e-23 112.8 116 47.4
Peaxi162Scf00533g00611 Petunia axillaris HOM05D006244 ORTHO05D007401 6.1e-22 109.0 150 41.3
Peaxi162Scf01193g00009 Petunia axillaris HOM05D006244 ORTHO05D007401 1.4e-21 107.8 150 41.3
Psat5g289440 Pisum sativum HOM05D006244 ORTHO05D007401 1.8e-21 107.5 116 46.6
Lj6A77G23 Lonicera japonica HOM05D006244 ORTHO05D007401 2.3e-21 107.1 97 57.7
Peaxi162Scf00066g02019 Petunia axillaris HOM05D006244 ORTHO05D007401 3.9e-21 106.3 150 40.7
Pp3c9_3600 Physcomitrium patens HOM05D006244 ORTHO05D007401 3.3e-20 103.2 247 27.9
Sabra17G0062000 Salix brachista HOM05D006244 ORTHO05D007401 7.4e-20 102.1 121 48.8
SMO364G0376 Selaginella moellendorffii HOM05D006244 ORTHO05D007401 3.7e-19 99.8 248 27.0
Lju337A6G22 Lonicera japonica HOM05D006244 ORTHO05D007401 2.6e-17 93.6 67 61.2
Lj6C77T3 Lonicera japonica HOM05D006244 ORTHO05D007401 7.7e-17 92.0 66 60.6
Peaxi162Scf00272g00041 Petunia axillaris HOM05D006244 ORTHO05D007401 7.7e-17 92.0 121 42.1
Peaxi162Scf00627g00001 Petunia axillaris HOM05D006244 ORTHO05D007401 2.9e-16 90.1 121 41.3
Peaxi162Scf00404g00815 Petunia axillaris HOM05D006244 ORTHO05D007401 9.4e-15 85.1 151 37.7
MBI08_g09972_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 4.7e-14 82.8 111 40.5
vmacro00645 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 8.0e-14 82.0 51 70.6
BcaC02g10138 Brassica carinata HOM05D006244 ORTHO05D007401 1.8e-13 80.9 224 29.5
Zm00001eb239190 Zea mays HOM05D001072 ORTHO05D007401 6.3e-11 72.4 65 46.2
Peaxi162Scf00255g00049 Petunia axillaris HOM05D006244 ORTHO05D007401 2.7e-06 57.0 86 38.4


User provided reference genes

Program Settings