Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 1.7e-114 416.0 212 100.0
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 1.8e-50 203.4 224 53.6
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 1.1e-49 200.7 196 58.2
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 4.3e-49 198.7 196 56.6
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 5.7e-49 198.4 152 67.8
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 3.7e-48 195.7 223 52.0
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 6.3e-48 194.9 189 56.6
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 3.1e-47 192.6 164 59.8
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 4.1e-47 192.2 162 63.0
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 1.2e-46 190.7 201 55.2
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 3.4e-46 189.1 190 55.8
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 7.7e-46 188.0 215 51.6
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 1.3e-45 187.2 202 52.5
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 1.3e-45 187.2 145 62.1
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 1.7e-45 186.8 178 57.3
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 2.2e-45 186.4 152 61.8
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 2.2e-45 186.4 171 57.3
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 2.2e-45 186.4 171 57.3
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 3.8e-45 185.7 153 62.7
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 3.8e-45 185.7 154 63.6
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 3.8e-45 185.7 158 63.3
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 3.8e-45 185.7 158 63.3
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 5.0e-45 185.3 156 62.2
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 6.5e-45 184.9 153 62.1
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 6.5e-45 184.9 176 57.4
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 8.5e-45 184.5 142 64.1
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 8.5e-45 184.5 171 57.3
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 1.9e-44 183.3 215 51.2
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 3.2e-44 182.6 145 62.8
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 3.2e-44 182.6 164 61.6
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 3.2e-44 182.6 157 62.4
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 3.2e-44 182.6 157 62.4
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 4.2e-44 182.2 225 49.8
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 5.5e-44 181.8 206 51.5
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 7.2e-44 181.4 191 55.0
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 7.2e-44 181.4 216 50.0
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 7.2e-44 181.4 222 51.4
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 1.2e-43 180.6 155 60.6
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 6.1e-43 178.3 197 53.3
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 7.9e-43 177.9 208 49.0
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 1.8e-42 176.8 222 49.1
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 3.9e-42 175.6 159 59.7
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 6.7e-42 174.9 164 58.5
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 1.5e-41 173.7 186 55.4
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 1.5e-41 173.7 183 50.8
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 2.0e-41 173.3 218 47.7
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 2.6e-41 172.9 162 53.7
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 2.6e-41 172.9 212 46.2
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 2.6e-41 172.9 194 51.0
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 4.4e-41 172.2 169 53.8
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 4.4e-41 172.2 169 53.8
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 4.4e-41 172.2 178 55.6
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 2.2e-40 169.9 143 62.2
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 2.2e-40 169.9 203 48.8
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 2.8e-40 169.5 159 58.5
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 3.7e-40 169.1 148 58.8
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 4.8e-40 168.7 148 58.8
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 4.8e-40 168.7 203 48.3
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 6.3e-40 168.3 124 66.9
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 1.4e-39 167.2 205 48.3
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 1.4e-39 167.2 169 56.2
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 1.8e-39 166.8 203 48.3
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 3.1e-39 166.0 221 47.5
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 3.1e-39 166.0 126 65.9
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 4.1e-39 165.6 196 49.5
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 5.3e-39 165.2 154 54.5
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 1.6e-38 163.7 131 60.3
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 1.6e-38 163.7 177 49.7
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 2.0e-38 163.3 175 49.7
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 2.6e-38 162.9 121 66.9
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 3.5e-38 162.5 165 51.5
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 4.5e-38 162.2 190 47.4
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 5.9e-38 161.8 134 61.2
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 1.7e-37 160.2 187 49.7
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 6.5e-37 158.3 192 47.9
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 1.9e-36 156.8 217 45.6
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 1.9e-36 156.8 217 45.6
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 4.2e-36 155.6 136 58.1
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 7.2e-36 154.8 208 45.2
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 1.2e-35 154.1 218 46.3
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 1.2e-35 154.1 128 62.5
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 1.0e-34 151.0 184 48.9
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 1.8e-34 150.2 120 61.7
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 6.7e-34 148.3 189 49.2
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 2.6e-33 146.4 149 49.0
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 2.6e-33 146.4 187 47.6
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 9.7e-33 144.4 117 61.5
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 1.7e-32 143.7 168 51.8
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 2.8e-32 142.9 141 48.2
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 3.7e-32 142.5 186 46.8
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 1.1e-31 141.0 128 51.6
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 1.2e-30 137.5 157 45.9
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 1.6e-30 137.1 231 42.0
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 7.5e-25 118.2 158 40.5
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 2.8e-24 116.3 182 45.1
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 3.7e-24 115.9 104 60.6
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 1.8e-23 113.6 150 44.7
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 2.4e-23 113.2 170 42.9
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 4.1e-23 112.5 183 42.1
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 9.1e-23 111.3 180 45.0
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 4.5e-22 109.0 193 42.5
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 1.7e-21 107.1 160 43.8
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 1.1e-20 104.4 193 35.8
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 6.1e-19 98.6 269 31.6
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 5.2e-18 95.5 73 63.0
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 6.3e-16 88.6 137 37.2
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 1.4e-15 87.4 114 43.0
Cre12.g534450 Chlamydomonas reinhardtii HOM05D007263 ORTHO05D009187 2.9e-13 79.7 128 35.9
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 3.6e-11 72.8 108 37.0
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 2.2e-08 63.5 126 34.1
Peaxi162Scf00450g00316 Petunia axillaris HOM05D002878 ORTHO05D003649 2.9e-08 63.2 130 32.3
Sabra04G0132300 Salix brachista HOM05D000052 ORTHO05D001127 6.4e-08 62.0 56 53.6
Sed0023782 Sechium edule HOM05D002878 ORTHO05D003649 4.1e-07 59.3 128 28.1
Solyc02g090890.4 Solanum lycopersicum HOM05D002878 ORTHO05D003649 4.1e-07 59.3 133 31.6
Nitab4.5_0002440g0040 Nicotiana tabacum HOM05D002878 ORTHO05D003649 7.0e-07 58.5 126 32.5
PGR004G0880 Punica granatum HOM05D002878 ORTHO05D003649 9.2e-07 58.2 131 34.4
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 9.2e-07 58.2 130 32.3
Sopen04g007210 Solanum pennellii HOM05D006552 ORTHO05D008023 2.0e-06 57.0 197 26.4
PGSC0003DMG400004020 Solanum tuberosum HOM05D002878 ORTHO05D003649 2.0e-06 57.0 129 31.0
SalBow1G5413 Salvia bowleyana HOM05D002878 ORTHO05D003649 2.7e-06 56.6 133 29.3
Sed0027368 Sechium edule HOM05D002878 ORTHO05D003649 2.7e-06 56.6 128 28.9
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 3.5e-06 56.2 71 39.4
CANSAT01G1312 Cannabis sativa HOM05D002878 ORTHO05D003649 4.6e-06 55.8 138 28.3
COL.COLO4_11419 Corchorus olitorius HOM05D002878 ORTHO05D003649 4.6e-06 55.8 130 33.1
MCO15G394 Micromonas commoda HOM05D003483 ORTHO05D004101 4.6e-06 55.8 114 33.3
PGSC0003DMG400019743 Solanum tuberosum HOM05D006552 ORTHO05D008023 4.6e-06 55.8 197 26.4
MSTRG.23744 Avicennia marina HOM05D002878 ORTHO05D003649 5.9e-06 55.5 74 40.5
Migut.H00431 Erythranthe guttata HOM05D002878 ORTHO05D003649 5.9e-06 55.5 132 34.1
Lsat_1_v5_gn_3_90761 Lactuca sativa HOM05D002878 ORTHO05D003649 7.8e-06 55.1 136 31.6


User provided reference genes

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