Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_028379 Daucus carota HOM05D006391 ORTHO05D007767 3.5e-196 688.3 414 100.0
TAR636G3322 Trochodendron aralioides HOM05D001448 ORTHO05D005781 2.9e-129 466.1 334 73.1
Lj2A39G66 Lonicera japonica HOM05D006391 ORTHO05D007767 1.6e-127 460.3 336 75.0
Nn1g02693 Nelumbo nucifera HOM05D006391 ORTHO05D007767 1.4e-123 447.2 412 61.4
Cc02_g09040 Coffea canephora HOM05D006391 ORTHO05D007767 8.9e-123 444.5 335 71.3
Atru.chr2.892 Acer truncatum HOM05D006391 ORTHO05D007767 1.2e-122 444.1 335 69.9
Potri.013G044600 Populus trichocarpa HOM05D006391 ORTHO05D007767 4.4e-122 442.2 332 69.3
Actinidia06783 Actinidia chinensis HOM05D006391 ORTHO05D007767 9.8e-122 441.0 336 72.0
Sabra13G0041000 Salix brachista HOM05D006391 ORTHO05D007767 2.9e-121 439.5 332 69.6
Eucgr.H04256 Eucalyptus grandis HOM05D006391 ORTHO05D007767 8.3e-121 438.0 333 71.5
Nitab4.5_0000856g0160 Nicotiana tabacum HOM05D006391 ORTHO05D007767 1.1e-120 437.6 335 71.0
PGR004G0019 Punica granatum HOM05D006391 ORTHO05D007767 1.4e-120 437.2 336 70.5
Solyc11g006080.2 Solanum lycopersicum HOM05D006391 ORTHO05D007767 1.9e-120 436.8 335 70.7
Sopen11g002020 Solanum pennellii HOM05D006391 ORTHO05D007767 1.9e-120 436.8 335 70.7
Dinv14621 Davidia involucrata HOM05D006391 ORTHO05D007767 4.1e-120 435.6 332 71.1
PGSC0003DMG400028690 Solanum tuberosum HOM05D006391 ORTHO05D007767 5.4e-120 435.3 335 70.1
Nitab4.5_0004928g0020 Nicotiana tabacum HOM05D006391 ORTHO05D007767 9.2e-120 434.5 340 69.7
Cfa006327 Carpinus fangiana HOM05D006391 ORTHO05D007767 1.6e-119 433.7 338 70.7
Peaxi162Scf00120g00213 Petunia axillaris HOM05D006391 ORTHO05D007767 2.7e-119 433.0 340 68.8
CANSAT54G0018 Cannabis sativa HOM05D006391 ORTHO05D007767 6.0e-119 431.8 335 69.6
GSVIVG01036208001 Vitis vinifera HOM05D006391 ORTHO05D007767 6.0e-119 431.8 336 67.3
SalBow3G3308 Salvia bowleyana HOM05D006391 ORTHO05D007767 1.7e-118 430.3 335 70.7
Manes.08G137500 Manihot esculenta HOM05D006391 ORTHO05D007767 3.0e-118 429.5 335 69.0
ECA233G2464 Erigeron canadensis HOM05D006391 ORTHO05D007767 5.0e-118 428.7 339 69.6
Thecc.05G276300 Theobroma cacao HOM05D006391 ORTHO05D007767 1.1e-117 427.6 334 67.1
COL.COLO4_15424 Corchorus olitorius HOM05D006391 ORTHO05D007767 1.9e-117 426.8 333 66.7
Ciclev10020524m.g Citrus clementina HOM05D006391 ORTHO05D007767 4.3e-117 425.6 336 68.5
CiPaw.07G078100 Carya illinoinensis HOM05D006391 ORTHO05D007767 7.3e-117 424.9 336 69.3
QL03p031977 Quercus lobata HOM05D006391 ORTHO05D007767 4.7e-116 422.2 333 68.2
Lsat_1_v5_gn_8_2721 Lactuca sativa HOM05D006391 ORTHO05D007767 8.1e-116 421.4 339 68.4
PSO210G7203 Papaver somniferum HOM05D006391 ORTHO05D007767 1.1e-115 421.0 334 68.3
Prupe.6G348300 Prunus persica HOM05D006391 ORTHO05D007767 1.8e-115 420.2 336 67.6
PSO832G3851 Papaver somniferum HOM05D006391 ORTHO05D007767 3.1e-115 419.5 334 68.3
Sc09g0004120 Simmondsia chinensis HOM05D006391 ORTHO05D007767 5.2e-115 418.7 335 67.2
TWI56G1126 Tripterygium wilfordii HOM05D006391 ORTHO05D007767 5.2e-115 418.7 335 67.5
vmacro20003 Vaccinium macrocarpon HOM05D006391 ORTHO05D007767 5.2e-115 418.7 336 69.0
Gohir.A11G251400 Gossypium hirsutum HOM05D006391 ORTHO05D007767 2.0e-114 416.8 333 64.6
CAN.G582.18 Capsicum annuum HOM05D006391 ORTHO05D007767 3.4e-114 416.0 332 68.7
MBI17_g17506_MAGBIO Magnolia biondii HOM05D006391 ORTHO05D007767 7.5e-114 414.8 335 67.2
FAN09G3726 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.7e-113 412.5 336 67.3
AUR62004876 Chenopodium quinoa HOM05D006391 ORTHO05D007767 4.9e-113 412.1 335 66.9
AUR62037609 Chenopodium quinoa HOM05D006391 ORTHO05D007767 6.4e-113 411.8 333 66.4
Gorai.007G280500 Gossypium raimondii HOM05D006391 ORTHO05D007767 6.4e-113 411.8 412 54.1
MD12G1245500 Malus domestica HOM05D006391 ORTHO05D007767 1.4e-112 410.6 335 66.3
FAN05G1344 Fragaria x ananassa HOM05D006391 ORTHO05D007767 2.4e-112 409.8 334 67.1
FAN05G3173 Fragaria x ananassa HOM05D006391 ORTHO05D007767 2.4e-112 409.8 334 67.1
EL10Ac4g09055 Beta vulgaris HOM05D006391 ORTHO05D007767 3.2e-112 409.5 330 67.3
Aqoxy5G00275 Aquilegia oxysepala HOM05D006391 ORTHO05D007767 4.1e-112 409.1 335 65.1
arahy.Tifrunner.gnm1.ann1.DTTE32 Arachis hypogaea HOM05D006391 ORTHO05D007767 9.2e-112 407.9 334 66.5
Medtr1g079830 Medicago truncatula HOM05D006391 ORTHO05D007767 1.2e-111 407.5 335 65.4
Ca_10006_v3 Cicer arietinum L. HOM05D006391 ORTHO05D007767 1.6e-111 407.1 411 57.4
Lalb_Chr21g0311261 Lupinus albus HOM05D006391 ORTHO05D007767 2.1e-111 406.8 335 64.8
TPR.G10279 Trifolium pratense HOM05D006391 ORTHO05D007767 2.1e-111 406.8 333 65.2
Duzib177G0389 Durio zibethinus HOM05D006391 ORTHO05D007767 2.7e-111 406.4 333 65.2
ATR0680G180 Amborella trichopoda HOM05D006391 ORTHO05D007767 3.5e-111 406.0 334 65.9
AL3G14580 Arabidopsis lyrata HOM05D006391 ORTHO05D007767 3.5e-111 406.0 338 64.8
AT3G04560 Arabidopsis thaliana HOM05D006391 ORTHO05D007767 3.5e-111 406.0 338 64.8
Gohir.D11G261800 Gossypium hirsutum HOM05D006391 ORTHO05D007767 3.5e-111 406.0 333 63.7
HanXRQChr08g0225371 Helianthus annuus HOM05D006391 ORTHO05D007767 3.5e-111 406.0 331 66.5
Lj5g0002062 Lotus japonicus HOM05D006391 ORTHO05D007767 4.6e-111 405.6 335 65.1
VMungo0720G1212 Vigna mungo HOM05D006391 ORTHO05D007767 4.6e-111 405.6 334 66.8
arahy.Tifrunner.gnm1.ann1.9EWV20 Arachis hypogaea HOM05D006391 ORTHO05D007767 6.0e-111 405.2 334 65.6
FAN02G0817 Fragaria x ananassa HOM05D006391 ORTHO05D007767 7.8e-111 404.8 334 66.8
Glyma.20G222100 Glycine max HOM05D006391 ORTHO05D007767 7.8e-111 404.8 335 65.7
CsaV3_1G045530 Cucumis sativus L. HOM05D006391 ORTHO05D007767 1.3e-110 404.1 336 65.8
Glyma.10G167000 Glycine max HOM05D006391 ORTHO05D007767 1.3e-110 404.1 335 66.3
unitig_32.g11831 Utricularia gibba HOM05D006391 ORTHO05D007767 1.3e-110 404.1 334 66.2
Carub.0003s0371 Capsella rubella HOM05D006391 ORTHO05D007767 8.6e-110 401.4 337 64.7
Phvul.L001863 Phaseolus vulgaris HOM05D006391 ORTHO05D007767 1.1e-109 401.0 334 65.0
Migut.F00812 Erythranthe guttata HOM05D006391 ORTHO05D007767 1.5e-109 400.6 332 65.4
CSS0020771 Camellia sinensis var. sinensis HOM05D006391 ORTHO05D007767 9.5e-109 397.9 335 66.6
RcHm_v2.0_Chr3g0450061 Rosa chinensis HOM05D006391 ORTHO05D007767 1.6e-108 397.1 337 64.1
Hund22148 Selenicereus undatus HOM05D006391 ORTHO05D007767 1.6e-108 397.1 330 67.3
AUR62001083 Chenopodium quinoa HOM05D006391 ORTHO05D007767 2.8e-108 396.4 357 61.6
THA.LOC104827288 Tarenaya hassleriana HOM05D006391 ORTHO05D007767 4.7e-108 395.6 338 63.9
Rhsim05G0175400 Rhododendron simsii HOM05D006391 ORTHO05D007767 1.4e-107 394.0 399 59.1
ClCG06G009350 Citrullus lanatus HOM05D006391 ORTHO05D007767 6.8e-107 391.7 336 64.0
Thhalv10020805m.g Eutrema salsugineum HOM05D006391 ORTHO05D007767 6.8e-107 391.7 343 63.0
BcaC05g30188 Brassica carinata HOM05D006391 ORTHO05D007767 4.4e-106 389.0 414 59.4
BolC5t34924H Brassica oleracea HOM05D006391 ORTHO05D007767 4.4e-106 389.0 334 63.2
BraA05t23038Z Brassica rapa HOM05D006391 ORTHO05D007767 1.7e-105 387.1 336 63.1
Aa31LG5G14980 Aethionema arabicum HOM05D006391 ORTHO05D007767 1.1e-104 384.4 337 63.2
CARHR078730 Cardamine hirsuta HOM05D006391 ORTHO05D007767 1.4e-104 384.0 337 62.9
FAN14G3605 Fragaria x ananassa HOM05D006391 ORTHO05D007767 1.9e-104 383.6 337 63.5
MELO3C024661.2 Cucumis melo HOM05D006391 ORTHO05D007767 3.2e-104 382.9 332 64.5
Haze_04461 Corylus avellana HOM05D006391 ORTHO05D007767 4.1e-104 382.5 448 52.5
Sp3g03400 Schrenkiella parvula HOM05D006391 ORTHO05D007767 4.1e-104 382.5 343 61.5
Sed0026137 Sechium edule HOM05D006391 ORTHO05D007767 5.4e-104 382.1 335 62.7
Sed0020342 Sechium edule HOM05D006391 ORTHO05D007767 7.1e-104 381.7 333 62.5
FAN14G5548 Fragaria x ananassa HOM05D006391 ORTHO05D007767 1.6e-103 380.6 337 63.2
FvH4_6g02310 Fragaria vesca HOM05D006391 ORTHO05D007767 3.5e-103 379.4 337 63.2
C05p62710 Brassica napus HOM05D006391 ORTHO05D007767 1.1e-99 367.9 318 62.9
BcaC05g29933 Brassica carinata HOM05D006391 ORTHO05D007767 4.0e-99 365.9 318 62.6
Os02g0820600 Oryza sativa ssp. japonica HOM05D006391 ORTHO05D007767 1.5e-98 364.0 341 58.9
A05p42930 Brassica napus HOM05D006391 ORTHO05D007767 2.6e-98 363.2 320 62.2
Sed0023982 Sechium edule HOM05D006391 ORTHO05D007767 9.3e-96 354.8 336 60.4
Ah.04g163310 Amaranthus hybridus HOM05D006391 ORTHO05D007767 3.5e-95 352.8 334 62.0
SGA_v2.0_scaffold243G44310 Striga asiatica HOM05D006391 ORTHO05D007767 1.5e-93 347.4 375 56.3
Zm00001eb259140 Zea mays HOM05D006391 ORTHO05D007767 1.1e-91 341.3 328 58.8
SEGI_17356 Sequoiadendron giganteum HOM05D006391 ORTHO05D007767 6.4e-89 332.0 337 54.3
CDE04G1237 Ceratophyllum demersum HOM05D006391 ORTHO05D007767 4.2e-80 302.8 313 56.5
MD04G1228400 Malus domestica HOM05D006391 ORTHO05D007767 1.1e-77 294.7 270 59.6
HPP92_007146 Vanilla planifolia HOM05D006391 ORTHO05D007767 1.1e-77 294.7 266 57.9
Cpa.g.sc162.14 Carica papaya HOM05D006391 ORTHO05D007767 1.5e-77 294.3 328 53.4
Pp3c19_8680 Physcomitrium patens HOM05D006391 ORTHO05D007767 4.5e-74 282.7 334 50.6
SMO203G0061 Selaginella moellendorffii HOM05D006391 ORTHO05D007767 2.1e-71 273.9 331 48.9
Psat6g143040 Pisum sativum HOM05D006391 ORTHO05D007767 9.6e-69 265.0 244 59.8
Mapoly0044s0074 Marchantia polymorpha HOM05D006391 ORTHO05D007767 2.6e-66 256.9 345 45.5
Oeu034581.1 Olea europaea HOM05D006391 ORTHO05D007767 2.4e-59 233.8 211 62.1
HPP92_007142 Vanilla planifolia HOM05D006391 ORTHO05D007767 5.9e-58 229.2 230 54.8
CBR_g8309 Chara braunii HOM05D006391 ORTHO05D007767 2.0e-50 204.1 354 39.0
QL03p032009 Quercus lobata HOM05D006391 ORTHO05D007767 7.4e-45 185.7 124 75.0
Oeu058337.1 Olea europaea HOM05D006391 ORTHO05D007767 1.7e-41 174.5 126 70.6
SHI23187 Sapria himalayana HOM05D006391 ORTHO05D007767 1.2e-37 161.8 123 64.2
HPP92_007141 Vanilla planifolia HOM05D006391 ORTHO05D007767 1.5e-32 144.8 88 81.8
MCO07G609 Micromonas commoda HOM05D006391 ORTHO05D007767 3.1e-19 100.5 333 27.3
BcaB04g19320 Brassica carinata HOM05D006391 ORTHO05D007767 5.2e-14 83.2 67 62.7
Cre02.g105450 Chlamydomonas reinhardtii HOM05D006391 ORTHO05D007767 8.3e-12 75.9 157 34.4
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 3.2e-11 73.9 58 56.9
BcaC02g11594 Brassica carinata HOM05D006391 ORTHO05D007767 4.1e-11 73.6 47 66.0
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 7.0e-11 72.8 46 69.6
PRCOL_00004538 Prasinoderma coloniale HOM05D006391 ORTHO05D007767 1.6e-10 71.6 327 25.7
MD04G1228300 Malus domestica HOM05D006391 ORTHO05D007767 6.6e-09 66.2 47 78.7


User provided reference genes

Program Settings