Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 1.3e-120 436.4 219 100.0
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 2.2e-27 126.7 126 50.8
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 1.1e-26 124.4 185 41.6
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.4e-26 124.0 156 44.2
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 5.3e-26 122.1 126 49.2
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 7.0e-26 121.7 126 49.2
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 2.7e-25 119.8 126 48.4
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 3.5e-25 119.4 206 35.4
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 3.5e-25 119.4 196 38.8
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.7e-24 117.1 126 46.8
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.7e-24 117.1 139 43.9
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 1.7e-24 117.1 126 45.2
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.2e-24 116.7 124 46.8
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 2.9e-24 116.3 126 46.8
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.9e-24 116.3 126 46.8
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 5.0e-24 115.5 126 46.8
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 2.5e-23 113.2 207 33.8
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 2.5e-23 113.2 127 43.3
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 4.2e-23 112.5 177 37.3
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 4.2e-23 112.5 177 37.3
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 5.5e-23 112.1 126 43.7
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 9.4e-23 111.3 126 45.2
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 1.6e-22 110.5 124 43.5
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 2.1e-22 110.2 126 45.2
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 4.7e-22 109.0 161 36.6
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.0e-21 107.8 126 46.8
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 2.3e-21 106.7 126 45.2
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 3.0e-21 106.3 126 43.7
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 8.8e-21 104.8 185 37.8
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 8.8e-21 104.8 129 44.2
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 8.8e-21 104.8 155 40.6
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 1.5e-20 104.0 170 37.1
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 2.0e-20 103.6 170 37.1
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 2.6e-20 103.2 170 37.1
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 2.6e-20 103.2 124 41.1
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 3.4e-20 102.8 170 36.5
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 4.4e-20 102.4 155 40.0
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 5.7e-20 102.1 170 36.5
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.7e-19 100.5 188 34.6
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 1.7e-19 100.5 125 40.8
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 1.7e-19 100.5 135 38.5
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 2.2e-19 100.1 126 43.7
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 3.7e-19 99.4 124 41.1
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 4.8e-19 99.0 127 41.7
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 4.8e-19 99.0 184 37.5
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 8.3e-19 98.2 209 34.0
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 1.4e-18 97.4 137 42.3
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 1.4e-18 97.4 126 41.3
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.8e-18 97.1 127 40.9
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 3.1e-18 96.3 124 40.3
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 3.1e-18 96.3 151 35.1
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 4.1e-18 95.9 127 40.9
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 4.1e-18 95.9 124 40.3
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 4.1e-18 95.9 124 40.3
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 4.1e-18 95.9 124 38.7
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 5.4e-18 95.5 127 40.2
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 7.0e-18 95.1 137 40.9
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 1.6e-17 94.0 118 41.5
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 1.6e-17 94.0 118 41.5
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 1.6e-17 94.0 108 41.7
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 2.7e-17 93.2 148 39.2
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 4.5e-17 92.4 122 38.5
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 5.9e-17 92.0 131 41.2
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 7.7e-17 91.7 129 38.0
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 7.7e-17 91.7 118 42.4
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 7.7e-17 91.7 126 40.5
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 7.7e-17 91.7 129 37.2
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.3e-16 90.9 167 34.1
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 2.2e-16 90.1 154 35.7
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 3.8e-16 89.4 117 41.9
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 3.8e-16 89.4 182 37.9
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 5.0e-16 89.0 127 40.9
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 5.0e-16 89.0 130 38.5
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 1.1e-15 87.8 119 46.2
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 1.5e-15 87.4 117 41.0
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 2.5e-15 86.7 111 45.0
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 2.5e-15 86.7 167 32.9
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 3.2e-15 86.3 118 39.8
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 5.5e-15 85.5 111 41.4
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 5.5e-15 85.5 125 36.8
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 5.5e-15 85.5 129 38.8
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 5.5e-15 85.5 121 37.2
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 7.2e-15 85.1 218 29.8
Haze_00196 Corylus avellana HOM05D002733 ORTHO05D003856 7.2e-15 85.1 125 36.0
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 9.5e-15 84.7 121 39.7
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 2.8e-14 83.2 118 39.0
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 4.7e-14 82.4 128 35.2
Phvul.005G031300 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 4.7e-14 82.4 105 41.9
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 6.1e-14 82.0 206 31.1
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 6.1e-14 82.0 118 39.0
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.0e-14 81.6 162 30.9
Aqoxy7G01497 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 8.0e-14 81.6 148 33.1
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 1.0e-13 81.3 206 31.1
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 1.0e-13 81.3 206 31.1
Aa31LG8G17210 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.4e-13 80.9 129 34.1
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 1.8e-13 80.5 131 38.2
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.3e-13 80.1 107 37.4
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 2.3e-13 80.1 123 39.0
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 2.3e-13 80.1 175 32.6
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 5.2e-13 79.0 206 30.1
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.8e-13 78.6 130 34.6
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 6.8e-13 78.6 206 30.1
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 1.2e-12 77.8 139 37.4
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 2.6e-12 76.6 204 27.9
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 2.6e-12 76.6 105 38.1
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 3.4e-12 76.3 105 39.0
Aqoxy1G01498 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 4.4e-12 75.9 134 35.1
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 7.5e-12 75.1 130 37.7
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 7.5e-12 75.1 147 32.7
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 7.5e-12 75.1 110 35.5
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 9.8e-12 74.7 136 33.1
Aa31LG8G17160 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.3e-11 74.3 162 30.9
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.3e-11 74.3 152 32.2
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.7e-11 73.9 151 30.5
Aa31LG7G1530 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.2e-11 73.6 162 30.2
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.2e-11 73.6 135 30.4
AT1G20600 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 4.9e-11 72.4 95 43.2
Sabra08G0161200 Salix brachista HOM05D002733 ORTHO05D003856 4.9e-11 72.4 95 41.1
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 4.9e-11 72.4 147 31.3
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 6.3e-11 72.0 111 38.7
A05p06630 Brassica napus HOM05D010480 ORTHO05D003856 8.3e-11 71.6 179 34.1
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 8.3e-11 71.6 163 30.7
Sp4g22040 Schrenkiella parvula HOM05D010480 ORTHO05D003856 8.3e-11 71.6 129 38.0
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.1e-10 71.2 118 36.4
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 1.1e-10 71.2 111 34.2
BcaC02g12108 Brassica carinata HOM05D010480 ORTHO05D003856 1.4e-10 70.9 133 37.6
C04p07780 Brassica napus HOM05D010480 ORTHO05D003856 1.4e-10 70.9 133 37.6
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 1.8e-10 70.5 134 36.6
BolC4t22395H Brassica oleracea HOM05D010480 ORTHO05D003856 2.4e-10 70.1 134 37.3
C04p07760 Brassica napus HOM05D010480 ORTHO05D003856 3.1e-10 69.7 176 33.5
BolC4t22393H Brassica oleracea HOM05D010480 ORTHO05D003856 3.1e-10 69.7 176 33.5
BraA05t19630Z Brassica rapa HOM05D010480 ORTHO05D003856 3.1e-10 69.7 179 33.5
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 5.4e-10 68.9 110 37.3
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 9.2e-10 68.2 102 38.2
BcaB02g09089 Brassica carinata HOM05D010480 ORTHO05D003856 1.6e-09 67.4 173 30.6
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 2.0e-09 67.0 121 33.1
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 2.0e-09 67.0 121 33.1
A05p06650 Brassica napus HOM05D010480 ORTHO05D003856 2.7e-09 66.6 162 31.5
C04p07770 Brassica napus HOM05D010480 ORTHO05D003856 2.7e-09 66.6 204 28.4
BraA05t19631Z Brassica rapa HOM05D010480 ORTHO05D003856 2.7e-09 66.6 162 31.5
BraA05t19632Z Brassica rapa HOM05D010480 ORTHO05D003856 2.7e-09 66.6 168 32.7
A05p06660 Brassica napus HOM05D010480 ORTHO05D003856 3.5e-09 66.2 167 33.5
BcaC02g12109 Brassica carinata HOM05D010480 ORTHO05D003856 4.5e-09 65.9 206 27.2
BcaC02g12110 Brassica carinata HOM05D010480 ORTHO05D003856 4.5e-09 65.9 176 31.8
BolC4t22394H Brassica oleracea HOM05D010480 ORTHO05D003856 4.5e-09 65.9 206 27.2
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 5.9e-09 65.5 121 33.1
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 1.7e-08 63.9 101 36.6
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 2.9e-08 63.2 107 35.5
Dinv41650 Davidia involucrata HOM05D002733 ORTHO05D003856 3.8e-08 62.8 144 34.7
TPR.G22027 Trifolium pratense HOM05D002733 ORTHO05D003856 3.8e-08 62.8 88 38.6
FAN19G0693 Fragaria x ananassa HOM05D002733 ORTHO05D003856 5.0e-08 62.4 146 31.5
Aa31LG7G1580 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.1e-07 61.2 84 41.7
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.1e-07 61.2 127 37.0
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 1.1e-07 61.2 128 32.8
COL.COLO4_00094 Corchorus olitorius HOM05D002733 ORTHO05D003856 4.3e-07 59.3 76 48.7
FAN28G2808 Fragaria x ananassa HOM05D002733 ORTHO05D003856 7.3e-07 58.5 66 43.9
BcaC01g05470 Brassica carinata HOM05D002733 ORTHO05D003856 1.2e-06 57.8 111 35.1
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 1.2e-06 57.8 127 31.5


User provided reference genes

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