Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 0.0e+00 2449.5 1296 100.0
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 5.1e-302 1041.6 1318 52.2
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 6.8e-286 988.0 1314 50.2
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 2.7e-250 869.8 1287 47.0
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 1.3e-249 867.5 1338 47.5
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 1.1e-248 864.4 1338 47.5
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 2.5e-248 863.2 1322 46.5
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 1.2e-245 854.4 1329 45.4
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.1e-243 847.8 1304 44.9
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 2.4e-243 846.7 1283 46.2
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 9.2e-243 844.7 1303 44.9
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 1.2e-242 844.3 1303 44.8
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 1.5e-240 837.4 1280 45.6
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 6.4e-236 822.0 1267 44.8
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 6.4e-236 822.0 1313 44.9
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 4.2e-235 819.3 1267 45.6
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 1.6e-234 817.4 1341 43.1
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 1.7e-233 813.9 1296 43.4
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.3e-233 813.5 1272 44.8
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 6.6e-233 812.0 1303 43.5
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 4.0e-230 802.7 1345 44.8
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 9.0e-230 801.6 1261 44.3
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 1.5e-229 800.8 1260 45.8
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 3.4e-229 799.7 1297 43.5
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 4.6e-226 789.3 1278 44.8
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 3.9e-225 786.2 1260 44.6
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 3.6e-223 779.6 1264 44.5
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 6.2e-223 778.9 1285 42.3
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 1.7e-220 770.8 1282 43.8
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 8.4e-220 768.5 1268 44.2
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 7.9e-218 761.9 1298 42.2
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 1.9e-216 757.3 1288 43.6
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 1.3e-215 754.6 1239 42.8
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 8.1e-215 751.9 1301 42.2
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 1.8e-214 750.7 1299 42.9
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 3.4e-213 746.5 1227 42.8
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 1.3e-212 744.6 1276 42.6
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 4.9e-212 742.7 1260 42.0
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 1.1e-211 741.5 1309 43.2
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 2.5e-211 740.3 1302 42.5
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 5.5e-211 739.2 1265 42.3
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 9.3e-211 738.4 1279 42.3
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 2.7e-210 736.9 1280 41.9
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 7.9e-210 735.3 1349 42.7
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 1.0e-209 734.9 1307 41.6
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 2.5e-208 730.3 1304 42.0
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 3.3e-208 729.9 1250 41.9
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.5e-205 721.1 1306 41.6
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 4.2e-203 713.0 1277 41.7
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 9.3e-203 711.8 1160 44.1
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 2.1e-202 710.7 1263 41.6
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 4.6e-202 709.5 1294 40.1
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 6.1e-202 709.1 1333 40.1
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 7.9e-202 708.8 1343 40.0
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 5.7e-200 702.6 1178 42.5
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 8.2e-199 698.7 1263 42.1
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 9.0e-198 695.3 1267 41.9
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 1.9e-195 687.6 1295 41.7
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 1.6e-194 684.5 1259 41.1
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 4.3e-192 676.4 1252 40.9
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 4.5e-189 666.4 1258 40.4
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 6.5e-188 662.5 1122 42.6
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 1.6e-186 657.9 1198 42.0
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 3.6e-186 656.8 1275 40.3
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 6.7e-185 652.5 1147 42.3
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 1.4e-182 644.8 1278 40.3
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 2.4e-182 644.0 1282 38.5
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 7.0e-182 642.5 1150 41.7
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 1.2e-181 641.7 1286 40.8
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 1.6e-181 641.3 1268 40.1
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 1.0e-180 638.6 1297 39.1
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 4.8e-175 619.8 1121 41.7
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 6.3e-175 619.4 1319 38.2
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 1.1e-174 618.6 1248 39.0
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 3.8e-172 610.1 1283 38.2
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 5.5e-171 606.3 1259 38.0
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 2.3e-169 600.9 1256 38.5
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 5.9e-165 586.3 990 42.3
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 1.5e-163 581.6 1262 37.7
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 6.1e-162 576.2 1297 37.6
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.5e-157 560.5 1202 38.4
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 2.3e-156 557.8 1500 34.2
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 2.3e-153 547.7 1222 38.6
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 5.4e-150 536.6 1257 37.2
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 7.0e-150 536.2 1266 36.1
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 5.0e-148 530.0 1255 35.3
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 8.0e-146 522.7 1269 35.5
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 8.0e-146 522.7 1170 36.9
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 1.8e-145 521.5 1258 35.3
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 1.8e-145 521.5 1262 34.9
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 3.1e-145 520.8 1217 35.5
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 6.4e-143 513.1 1259 35.3
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.0e-140 504.2 868 41.0
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 1.5e-131 475.3 1276 35.1
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 3.3e-131 474.2 1276 35.1
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.2e-130 472.2 1058 36.5
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 1.8e-129 468.4 1247 34.1
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 2.3e-129 468.0 1247 34.1
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 9.9e-128 462.6 616 51.0
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 1.3e-127 462.2 1236 33.9
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 9.2e-126 456.1 608 49.7
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 3.3e-123 447.6 625 51.0
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 1.3e-106 392.5 690 42.2
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 2.6e-104 384.8 823 37.4
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 1.7e-103 382.1 928 34.1
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 5.6e-99 367.1 464 49.4
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 3.4e-96 357.8 1267 32.5
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 2.1e-93 348.6 517 45.6
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 9.0e-89 333.2 641 38.8
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 1.9e-86 325.5 398 52.8
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 5.1e-84 317.4 654 40.2
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-83 315.8 490 46.1
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 4.8e-82 310.8 519 41.4
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 1.0e-68 266.5 493 38.9
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 5.2e-68 264.2 504 40.7
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 5.2e-68 264.2 324 48.5
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 7.2e-62 243.8 600 34.8
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 1.5e-54 219.5 577 32.9
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 1.9e-54 219.2 291 45.7
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 1.3e-50 206.5 519 32.8
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 3.7e-50 204.9 519 32.4
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 5.7e-43 181.0 258 54.3
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 2.8e-42 178.7 372 37.9
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 2.7e-40 172.2 521 32.4
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 1.3e-39 169.9 256 51.6
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 2.5e-38 165.6 484 30.4
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 9.5e-38 163.7 844 26.4
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 5.7e-35 154.5 235 46.0
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 4.9e-34 151.4 153 49.7
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 6.6e-31 141.0 242 40.1
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 7.3e-30 137.5 698 27.4
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 3.1e-28 132.1 597 27.0
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 2.4e-25 122.5 415 29.4
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 2.5e-22 112.5 392 28.8
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 4.0e-20 105.1 549 30.4
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 6.8e-20 104.4 248 35.1
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.2e-18 99.4 106 70.8
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 6.4e-18 97.8 242 33.1
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.5e-14 86.7 127 40.9
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 3.4e-11 75.5 572 22.7
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 7.6e-11 74.3 60 58.3
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 6.4e-10 71.2 63 58.7
Haze_20535 Corylus avellana HOM05D002890 ORTHO05D038830 2.7e-08 65.9 125 37.6


User provided reference genes

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