Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 1.5e-118 429.5 205 100.0
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 5.8e-99 364.4 201 83.1
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 2.1e-96 355.9 205 81.0
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 2.7e-96 355.5 207 79.7
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 3.5e-96 355.1 203 80.8
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 3.5e-96 355.1 203 80.8
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 4.6e-96 354.8 205 82.0
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 7.8e-96 354.0 201 80.6
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 1.3e-95 353.2 200 81.5
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 2.3e-95 352.4 203 80.3
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 2.3e-95 352.4 203 80.3
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 3.0e-95 352.1 200 80.5
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 5.1e-95 351.3 202 82.2
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 6.6e-95 350.9 201 79.6
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 1.1e-94 350.1 201 80.6
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 1.1e-94 350.1 201 80.6
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 1.5e-94 349.7 201 80.1
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 1.5e-94 349.7 203 79.3
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 1.9e-94 349.4 203 80.3
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 2.5e-94 349.0 202 80.7
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 3.3e-94 348.6 203 79.3
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 4.3e-94 348.2 204 77.9
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 5.6e-94 347.8 202 79.7
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 9.6e-94 347.1 207 78.7
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 1.2e-93 346.7 203 78.8
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 1.2e-93 346.7 205 78.5
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 2.8e-93 345.5 200 80.5
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 4.7e-93 344.7 196 79.1
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 6.2e-93 344.4 198 80.8
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 6.2e-93 344.4 198 80.8
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 8.1e-93 344.0 201 78.1
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 1.4e-92 343.2 200 80.5
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 1.4e-92 343.2 202 78.2
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 1.4e-92 343.2 207 77.3
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 1.8e-92 342.8 207 76.8
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 1.8e-92 342.8 209 77.0
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 3.1e-92 342.0 207 76.8
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 3.1e-92 342.0 200 79.5
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 3.1e-92 342.0 205 78.0
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 5.2e-92 341.3 203 77.3
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 5.2e-92 341.3 202 78.7
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 6.9e-92 340.9 207 76.8
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 6.9e-92 340.9 202 78.2
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 8.9e-92 340.5 202 78.7
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 1.2e-91 340.1 207 76.3
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 1.2e-91 340.1 206 78.2
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 1.5e-91 339.7 203 77.3
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 2.0e-91 339.3 206 76.2
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 2.0e-91 339.3 203 77.8
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 2.6e-91 339.0 210 76.2
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 2.6e-91 339.0 202 79.2
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 3.4e-91 338.6 202 77.7
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 9.9e-91 337.0 203 76.8
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 1.3e-90 336.7 206 77.7
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 1.7e-90 336.3 204 76.0
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 2.2e-90 335.9 203 78.3
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 2.2e-90 335.9 204 76.0
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 2.9e-90 335.5 202 75.7
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 2.9e-90 335.5 228 69.7
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 4.9e-90 334.7 202 77.2
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 8.4e-90 334.0 207 76.3
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 8.4e-90 334.0 203 76.4
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 2.4e-89 332.4 200 77.5
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 2.4e-89 332.4 204 76.0
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 3.2e-89 332.0 208 75.5
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 3.2e-89 332.0 203 77.3
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 4.2e-89 331.6 207 74.9
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 9.3e-89 330.5 201 76.6
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 9.3e-89 330.5 203 75.9
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 1.2e-88 330.1 205 76.6
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 1.2e-88 330.1 215 73.5
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 1.2e-88 330.1 200 76.5
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 2.1e-88 329.3 205 75.1
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 2.7e-88 328.9 204 77.0
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 6.0e-88 327.8 201 76.6
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 7.8e-88 327.4 203 76.8
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 7.8e-88 327.4 203 76.4
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 7.8e-88 327.4 201 76.6
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 1.0e-87 327.0 201 76.1
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 1.3e-87 326.6 208 74.5
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 3.0e-87 325.5 201 75.1
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 3.0e-87 325.5 201 76.1
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 5.1e-87 324.7 199 76.4
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 8.7e-87 323.9 199 76.4
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 1.1e-86 323.6 199 76.4
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 3.3e-86 322.0 202 74.3
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 4.3e-86 321.6 201 75.6
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 4.3e-86 321.6 201 75.6
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 9.6e-86 320.5 196 75.0
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 4.8e-85 318.2 199 75.9
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 8.1e-85 317.4 198 77.3
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 4.0e-84 315.1 198 76.3
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 6.9e-84 314.3 207 72.9
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 6.9e-84 314.3 193 76.2
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 2.9e-82 308.9 198 74.7
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 8.4e-82 307.4 198 74.2
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 1.4e-81 306.6 198 73.2
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 9.3e-81 303.9 198 73.2
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 2.3e-79 299.3 183 76.5
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 2.8e-77 292.4 205 70.2
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 1.9e-73 279.6 171 76.6
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 3.2e-73 278.9 198 67.7
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 5.5e-73 278.1 197 66.0
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 3.5e-72 275.4 164 78.0
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 5.1e-71 271.6 162 78.4
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 6.2e-69 264.6 199 63.3
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 1.3e-63 246.9 146 79.5
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 1.8e-63 246.5 201 57.2
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 2.3e-63 246.1 205 54.1
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 1.1e-62 243.8 205 56.6
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 1.9e-62 243.0 160 72.5
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 6.3e-61 238.0 202 60.4
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 2.4e-60 236.1 202 59.9
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 2.5e-57 226.1 203 53.2
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 4.2e-57 225.3 143 76.9
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 2.1e-56 223.0 195 57.9
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 8.7e-55 217.6 132 78.0
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 8.5e-50 201.1 124 72.6
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 2.1e-48 196.4 145 67.6
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 2.1e-48 196.4 119 75.6
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 6.1e-48 194.9 119 75.6
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 1.4e-47 193.7 145 66.9
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.0e-42 177.6 160 58.1
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 2.2e-42 176.4 97 81.4
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 5.7e-38 161.8 162 52.5
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 1.6e-32 143.7 100 70.0
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 4.0e-31 139.0 201 39.3
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 7.7e-27 124.8 207 42.5
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 3.6e-24 115.9 100 60.0
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 1.8e-23 113.6 75 68.0
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 3.0e-23 112.8 75 65.3
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 1.8e-20 103.6 75 65.3
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 3.1e-20 102.8 60 78.3
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 9.2e-12 74.7 37 83.8
Lalb_Chr05g0228961 Lupinus albus HOM05D005624 ORTHO05D006896 2.8e-08 63.2 35 82.9
Lsat_1_v5_gn_4_78441 Lactuca sativa HOM05D005624 ORTHO05D006896 3.6e-08 62.8 41 68.3
Os09g0512900 Oryza sativa ssp. japonica HOM05D005624 ORTHO05D006896 4.0e-07 59.3 36 75.0
SEGI_32969 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 6.8e-07 58.5 34 76.5


User provided reference genes

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