Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 0.0e+00 1103.2 550 100.0
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 2.8e-233 812.0 551 75.0
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 9.1e-232 807.0 551 73.7
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 9.1e-232 807.0 554 74.4
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 1.7e-230 802.7 556 74.6
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 5.0e-230 801.2 558 73.3
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 8.5e-230 800.4 559 72.6
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 1.4e-229 799.7 559 71.7
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 4.2e-229 798.1 553 73.6
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 7.2e-229 797.3 547 74.2
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 6.1e-228 794.3 553 73.6
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 1.0e-227 793.5 557 72.2
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 3.9e-227 791.6 552 73.2
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 3.9e-227 791.6 559 73.5
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 2.0e-226 789.3 556 73.4
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 9.7e-226 786.9 563 70.3
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.3e-225 786.6 568 71.1
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 1.3e-225 786.6 549 72.7
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 2.8e-225 785.4 569 69.4
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.8e-224 782.7 550 74.0
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 3.4e-223 778.5 560 70.2
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 4.5e-223 778.1 550 71.1
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 1.3e-222 776.5 559 68.9
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 2.2e-222 775.8 568 68.8
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 5.0e-222 774.6 567 69.3
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 3.7e-217 758.4 558 70.4
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 2.4e-216 755.7 545 71.4
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 3.1e-216 755.4 554 68.4
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.2e-215 753.4 554 68.4
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 3.5e-215 751.9 487 76.8
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 2.9e-214 748.8 569 66.4
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.8e-214 748.4 559 68.9
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.0e-214 748.0 567 68.4
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 5.0e-214 748.0 569 67.3
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 8.5e-214 747.3 559 67.8
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.1e-213 746.9 551 71.9
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 1.5e-213 746.5 564 68.1
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.9e-213 746.1 562 68.0
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 5.5e-213 744.6 548 70.4
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.6e-212 743.0 553 68.2
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.1e-212 742.7 554 68.4
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.1e-212 742.7 554 68.4
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 6.1e-212 741.1 549 69.6
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 6.1e-212 741.1 557 70.7
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 1.8e-208 729.6 547 67.5
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 2.4e-208 729.2 555 68.8
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 7.0e-208 727.6 547 67.5
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 7.7e-207 724.2 577 63.1
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 6.5e-206 721.1 562 66.2
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 6.5e-206 721.1 567 65.1
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 8.5e-206 720.7 563 66.6
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 1.1e-205 720.3 550 68.0
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 1.5e-205 719.9 556 68.2
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 5.5e-205 718.0 572 64.2
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 8.0e-204 714.1 450 78.0
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.8e-203 713.0 566 65.4
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 5.2e-203 711.4 567 65.8
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 6.8e-203 711.1 567 66.3
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 6.8e-203 711.1 549 67.0
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 1.5e-202 709.9 545 67.2
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 2.0e-202 709.5 568 64.8
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 3.4e-202 708.8 567 65.3
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 3.4e-202 708.8 567 65.3
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 3.4e-202 708.8 567 65.3
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 1.3e-201 706.8 566 65.0
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 1.3e-201 706.8 563 64.8
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 2.8e-201 705.7 567 65.3
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 3.7e-201 705.3 568 65.7
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 7.0e-200 701.0 561 64.2
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 3.5e-199 698.7 562 64.9
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 3.8e-198 695.3 560 64.1
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 6.5e-198 694.5 553 64.2
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 1.5e-197 693.3 565 63.9
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 5.5e-197 691.4 550 64.0
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.2e-194 683.7 558 64.0
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 1.5e-194 683.3 550 64.5
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 5.7e-194 681.4 553 64.7
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 7.5e-194 681.0 555 63.6
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 1.3e-193 680.2 551 64.8
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 2.8e-193 679.1 452 76.8
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 4.9e-193 678.3 573 62.5
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 6.3e-193 677.9 560 64.1
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 1.8e-192 676.4 548 64.6
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 2.4e-192 676.0 549 64.1
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 1.2e-191 673.7 550 64.4
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 2.0e-191 672.9 557 62.3
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 2.7e-191 672.5 565 64.2
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 5.9e-191 671.4 565 64.1
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 5.0e-190 668.3 565 63.0
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 6.6e-190 667.9 552 62.5
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 9.5e-189 664.1 441 73.0
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 2.8e-188 662.5 555 60.9
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 4.7e-188 661.8 557 61.4
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 6.1e-188 661.4 547 62.5
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 6.8e-187 657.9 561 62.0
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 6.8e-187 657.9 557 61.0
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 6.8e-187 657.9 557 60.9
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 1.5e-186 656.8 547 61.2
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 5.8e-186 654.8 569 60.3
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 8.3e-185 651.0 561 63.1
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 2.4e-184 649.4 557 62.3
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 3.2e-184 649.0 563 61.8
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 7.8e-183 644.4 411 75.7
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 3.9e-182 642.1 572 59.6
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 8.6e-182 641.0 553 60.2
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 2.5e-181 639.4 552 60.0
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 7.3e-181 637.9 555 61.6
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 3.6e-180 635.6 555 59.5
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 8.0e-180 634.4 457 67.6
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 4.1e-176 622.1 527 62.4
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 1.7e-174 616.7 554 58.5
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 1.4e-171 607.1 585 55.6
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 6.8e-171 604.7 558 57.9
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 3.4e-170 602.4 554 58.7
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 1.7e-169 600.1 401 73.1
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 6.0e-167 591.7 539 58.3
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 1.6e-164 583.6 384 72.9
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 2.1e-164 583.2 557 56.6
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 1.3e-161 573.9 338 81.4
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 1.7e-161 573.5 560 58.9
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 1.2e-151 540.8 549 55.2
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 1.6e-148 530.4 555 53.0
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 2.8e-148 529.6 505 55.0
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 3.8e-145 519.2 301 82.4
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 1.3e-132 477.6 470 57.0
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.7e-129 467.2 457 48.6
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 2.7e-103 380.2 392 46.4
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 1.0e-102 378.3 391 52.4
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 1.5e-101 374.4 314 66.2
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 1.5e-101 374.4 503 46.5
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 3.6e-95 353.2 197 84.8
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 2.3e-94 350.5 390 50.0
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.0e-86 325.1 357 50.7
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.0e-86 323.6 210 71.0
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.9e-81 307.0 287 56.1
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 8.6e-73 278.9 155 83.9
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 5.1e-57 226.5 199 56.8
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 2.5e-56 224.2 280 50.7
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.1e-51 208.8 171 64.9
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 3.5e-50 203.8 206 57.3
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 8.4e-44 182.6 286 42.3
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 1.9e-35 154.8 91 79.1
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.6e-34 151.8 91 78.0
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 7.3e-32 142.9 474 26.6
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.5e-24 118.6 79 69.6
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 2.5e-24 117.9 69 79.7
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 3.3e-24 117.5 76 75.0
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 3.3e-24 117.5 115 53.0
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 6.2e-23 113.2 69 76.8
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 6.9e-22 109.8 152 46.1
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 8.4e-20 102.8 180 34.4
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 3.7e-15 87.4 51 80.4
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 4.8e-15 87.0 73 57.5
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.5e-11 73.6 87 47.1
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.2e-10 72.4 114 40.4
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.1e-08 65.9 51 58.8
Nitab4.5_0001302g0060 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.4e-06 58.2 39 66.7


User provided reference genes

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