Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 4.1e-149 531.9 406 100.0
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 8.8e-75 285.0 383 71.5
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 8.3e-73 278.5 390 70.5
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 1.4e-72 277.7 385 70.1
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 1.0e-70 271.6 389 69.2
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 2.3e-70 270.4 387 65.4
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 3.3e-69 266.5 389 69.2
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 9.5e-69 265.0 387 65.4
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 1.2e-68 264.6 389 66.1
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 1.6e-68 264.2 387 65.4
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 1.6e-68 264.2 387 65.9
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 2.1e-68 263.8 389 68.9
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 3.6e-68 263.1 385 68.1
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 8.0e-68 261.9 389 67.9
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 1.8e-67 260.8 389 67.9
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 2.3e-67 260.4 403 62.3
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 6.8e-67 258.8 398 63.3
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 1.2e-66 258.1 387 67.2
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 2.8e-65 253.4 384 66.9
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 3.7e-65 253.1 390 66.9
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 1.1e-64 251.5 387 67.2
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.4e-64 250.4 386 66.8
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 2.4e-64 250.4 389 64.8
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 2.4e-64 250.4 389 65.0
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 3.1e-64 250.0 388 67.3
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 3.1e-64 250.0 388 67.3
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 4.1e-64 249.6 389 63.8
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 5.4e-64 249.2 389 65.3
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 9.2e-64 248.4 390 65.9
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 1.2e-63 248.1 391 63.4
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 2.7e-63 246.9 320 71.2
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 2.7e-63 246.9 389 63.8
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 4.5e-63 246.1 388 64.9
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 4.5e-63 246.1 383 63.4
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 5.9e-63 245.7 389 67.1
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 7.8e-63 245.4 391 66.8
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 7.8e-63 245.4 386 66.3
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.0e-62 245.0 389 66.8
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.3e-62 244.6 385 65.7
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 1.7e-62 244.2 381 61.2
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 3.9e-62 243.0 388 61.9
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 1.1e-61 241.5 389 60.2
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 3.3e-61 240.0 386 65.0
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 4.3e-61 239.6 388 66.8
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 5.6e-61 239.2 320 69.4
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 7.3e-61 238.8 385 63.9
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.6e-60 237.7 383 61.4
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 1.6e-60 237.7 385 63.9
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 2.8e-60 236.9 387 64.3
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 6.1e-60 235.7 387 64.3
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 8.0e-60 235.3 387 63.6
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 8.0e-60 235.3 389 66.1
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 8.0e-60 235.3 388 67.0
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 1.0e-59 235.0 399 59.6
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 1.4e-59 234.6 387 65.1
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.4e-59 234.6 387 63.0
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 1.8e-59 234.2 394 58.6
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 2.3e-59 233.8 389 66.1
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 3.1e-59 233.4 391 60.4
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 3.1e-59 233.4 383 61.6
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 5.2e-59 232.6 387 62.8
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 6.8e-59 232.3 387 60.5
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 1.5e-58 231.1 397 61.0
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 1.5e-58 231.1 387 64.3
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.0e-58 230.7 389 65.6
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 2.6e-58 230.3 387 61.0
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 2.6e-58 230.3 388 65.7
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 3.4e-58 229.9 387 64.3
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 4.4e-58 229.6 389 66.1
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 7.5e-58 228.8 384 65.9
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 9.8e-58 228.4 385 62.1
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 9.8e-58 228.4 382 66.0
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 9.8e-58 228.4 385 61.8
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.3e-57 228.0 391 65.7
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 1.7e-57 227.6 386 64.5
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 1.7e-57 227.6 389 62.7
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 2.2e-57 227.3 384 62.2
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 3.7e-57 226.5 388 63.1
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 4.9e-57 226.1 380 60.8
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 4.9e-57 226.1 396 63.9
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 4.9e-57 226.1 389 65.0
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 8.3e-57 225.3 387 62.3
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 8.3e-57 225.3 386 62.7
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 8.3e-57 225.3 387 64.9
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 1.4e-56 224.6 397 59.9
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 1.9e-56 224.2 387 61.8
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 3.2e-56 223.4 384 61.7
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 5.4e-56 222.6 387 60.2
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 2.0e-55 220.7 370 63.2
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 4.6e-55 219.5 385 62.9
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 6.0e-55 219.2 410 58.3
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 7.8e-55 218.8 410 58.3
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.3e-54 217.2 386 60.1
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 3.0e-54 216.9 357 65.0
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 3.0e-54 216.9 387 63.6
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 5.0e-54 216.1 384 62.0
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 6.6e-54 215.7 386 59.8
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 6.6e-54 215.7 325 65.2
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 2.5e-53 213.8 397 58.2
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 2.5e-53 213.8 397 58.2
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 2.5e-53 213.8 397 58.2
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 3.3e-53 213.4 397 58.2
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 5.6e-53 212.6 385 58.4
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.2e-52 211.5 322 67.4
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.2e-52 211.5 368 63.9
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 2.8e-52 210.3 387 63.0
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 3.6e-52 209.9 394 62.4
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 4.7e-52 209.5 389 64.0
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 6.2e-52 209.1 397 57.9
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 6.2e-52 209.1 397 57.9
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 8.0e-52 208.8 374 58.3
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 8.0e-52 208.8 374 58.3
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 8.0e-52 208.8 382 58.4
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 1.4e-51 208.0 324 64.5
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 3.1e-51 206.8 393 64.1
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 2.0e-50 204.1 396 61.6
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 2.6e-50 203.8 326 65.0
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 5.8e-50 202.6 387 58.1
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 9.8e-50 201.8 396 61.4
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 4.9e-49 199.5 325 64.6
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 6.4e-49 199.1 334 63.2
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 3.2e-48 196.8 398 60.8
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 7.0e-48 195.7 387 61.8
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 9.2e-48 195.3 391 61.4
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 7.3e-45 185.7 395 53.2
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 1.8e-43 181.0 392 61.0
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 1.8e-43 181.0 187 51.9
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 3.7e-41 173.3 419 55.6
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 6.4e-41 172.6 345 56.5
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 2.7e-39 167.2 391 59.1
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 2.7e-39 167.2 391 59.1
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 3.5e-39 166.8 415 56.1
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 6.0e-39 166.0 391 58.8
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 1.0e-38 165.2 283 75.3
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 2.3e-38 164.1 397 51.9
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 5.1e-38 162.9 422 54.7
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 3.3e-37 160.2 398 54.5
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 3.3e-37 160.2 384 58.3
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 1.4e-35 154.8 270 65.9
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 1.8e-35 154.5 375 36.3
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 1.8e-35 154.5 391 40.2
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 1.2e-34 151.8 329 61.1
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 5.8e-34 149.4 381 58.8
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 3.8e-33 146.7 193 48.2
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 1.4e-32 144.8 193 47.2
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 1.4e-32 144.8 256 72.7
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 1.2e-31 141.7 343 49.0
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 6.6e-30 136.0 399 45.1
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 4.3e-29 133.3 288 66.7
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 2.4e-27 127.5 163 46.0
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 5.3e-27 126.3 254 75.2
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 1.1e-24 118.6 423 44.7
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 4.2e-24 116.7 300 56.7
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 2.1e-23 114.4 403 51.9
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 6.6e-22 109.4 121 50.4
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 1.5e-21 108.2 327 50.8
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 1.9e-21 107.8 102 61.8
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 1.6e-20 104.8 118 58.5
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.4e-16 90.9 108 46.3
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 4.2e-16 90.1 253 57.3
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 3.0e-14 84.0 119 42.0
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 5.6e-13 79.7 116 44.0
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 3.7e-12 77.0 188 32.4
ATR0705G001 Amborella trichopoda HOM05D004193 ORTHO05D004862 9.0e-11 72.4 117 47.0
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 4.9e-09 66.6 171 35.7


User provided reference genes

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