Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 5.9e-180 634.0 307 100.0
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 8.0e-161 570.5 303 91.1
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 1.5e-95 353.6 239 71.1
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 2.7e-84 316.2 299 51.8
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 1.8e-80 303.5 318 50.3
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 2.4e-80 303.1 315 50.8
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 5.3e-80 302.0 300 52.3
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 6.9e-80 301.6 308 51.3
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 1.2e-79 300.8 276 52.9
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 1.5e-79 300.4 307 50.2
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 2.0e-79 300.1 312 49.7
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 2.6e-79 299.7 310 49.7
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 2.6e-79 299.7 315 50.5
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 4.5e-79 298.9 310 49.4
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 4.5e-79 298.9 310 49.4
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 4.5e-79 298.9 310 50.6
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 7.6e-79 298.1 317 50.2
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 1.3e-78 297.4 290 50.0
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 2.2e-78 296.6 316 48.4
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 3.8e-78 295.8 317 48.3
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 4.9e-78 295.4 306 49.7
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 6.5e-78 295.0 273 52.0
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 8.4e-78 294.7 309 50.2
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.1e-77 294.3 302 49.3
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 1.4e-77 293.9 308 50.0
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 2.5e-77 293.1 312 48.7
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 5.5e-77 292.0 271 52.0
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 5.5e-77 292.0 314 48.1
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 5.5e-77 292.0 314 48.7
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 9.3e-77 291.2 307 49.5
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 1.2e-76 290.8 315 48.3
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 1.6e-76 290.4 304 47.4
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 1.6e-76 290.4 308 49.7
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 2.1e-76 290.0 298 52.0
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 3.5e-76 289.3 314 49.4
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 3.5e-76 289.3 308 49.4
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 3.5e-76 289.3 301 49.8
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 4.6e-76 288.9 296 51.0
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 4.6e-76 288.9 315 48.3
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 6.0e-76 288.5 304 47.4
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 7.9e-76 288.1 330 47.0
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.0e-75 287.7 308 49.7
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 1.8e-75 287.0 309 48.9
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 2.3e-75 286.6 309 48.9
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 3.0e-75 286.2 313 48.9
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 3.0e-75 286.2 320 47.8
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 3.9e-75 285.8 293 50.5
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 5.1e-75 285.4 306 48.7
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 1.5e-74 283.9 309 48.5
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 1.5e-74 283.9 306 49.3
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 1.9e-74 283.5 318 47.5
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 2.5e-74 283.1 320 46.9
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 4.3e-74 282.3 292 49.0
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 5.7e-74 282.0 309 46.9
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 9.6e-74 281.2 313 48.6
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 9.6e-74 281.2 308 48.4
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 1.6e-73 280.4 309 46.9
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 6.3e-73 278.5 309 48.5
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 1.1e-72 277.7 309 48.9
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 1.1e-72 277.7 305 47.9
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 1.8e-72 276.9 309 47.6
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 1.8e-72 276.9 348 44.5
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 3.1e-72 276.2 302 49.7
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 4.1e-72 275.8 309 47.6
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 5.3e-72 275.4 307 45.6
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 1.5e-71 273.9 323 46.4
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 2.0e-71 273.5 310 48.1
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 2.0e-71 273.5 301 47.5
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 2.6e-71 273.1 322 45.7
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 4.5e-71 272.3 302 47.7
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 4.5e-71 272.3 299 47.5
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 7.6e-71 271.6 302 47.7
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 1.7e-70 270.4 304 48.0
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 1.7e-70 270.4 315 47.6
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 2.2e-70 270.0 255 54.9
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 2.9e-70 269.6 302 47.0
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 2.9e-70 269.6 240 60.0
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 8.5e-70 268.1 307 47.6
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 2.5e-69 266.5 328 46.3
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 2.5e-69 266.5 325 46.8
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 3.2e-69 266.2 308 47.1
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 3.2e-69 266.2 309 46.6
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 5.5e-69 265.4 307 47.6
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 2.7e-68 263.1 247 55.1
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 3.6e-68 262.7 230 57.8
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.1e-66 257.7 223 57.8
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 1.5e-66 257.3 229 56.3
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 1.8e-64 250.4 308 44.8
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 3.1e-64 249.6 315 43.8
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 5.9e-63 245.4 273 46.5
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 2.9e-62 243.0 315 44.1
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 1.1e-61 241.1 329 42.9
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.4e-61 240.7 315 44.4
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 2.8e-57 226.5 306 41.8
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 8.2e-57 224.9 302 44.0
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 3.1e-56 223.0 314 41.7
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 6.9e-56 221.9 220 50.0
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 2.0e-55 220.3 308 41.9
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 2.0e-55 220.3 280 44.3
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 4.2e-53 212.6 246 48.4
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 6.1e-52 208.8 250 45.6
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.1e-50 204.5 175 55.4
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 1.5e-50 204.1 265 44.2
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 1.1e-48 198.0 212 49.1
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 1.8e-48 197.2 309 40.5
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 1.7e-46 190.7 244 42.2
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.1e-45 188.0 166 59.6
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 9.4e-45 184.9 156 55.1
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 2.7e-44 183.3 170 52.9
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 1.2e-42 177.9 171 53.8
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.5e-42 177.6 308 36.7
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 1.2e-39 167.9 127 60.6
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 1.1e-32 144.8 218 36.7
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 2.7e-31 140.2 167 42.5
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 5.9e-31 139.0 238 37.0
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 4.7e-28 129.4 111 55.9
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 4.7e-28 129.4 137 49.6
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 6.8e-27 125.6 224 37.5
SalBow2G0785 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.5e-26 124.4 174 42.5
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 5.7e-26 122.5 208 35.6
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 1.3e-25 121.3 415 25.8
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.4e-24 117.9 133 42.9
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 4.1e-24 116.3 142 40.1
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 1.9e-13 80.9 62 56.5
TPR.G7274 Trifolium pratense HOM05D005657 ORTHO05D007104 4.3e-13 79.7 56 64.3
unitig_26.g9757 Utricularia gibba HOM05D005657 ORTHO05D007104 1.4e-11 74.7 65 50.8
COL.COLO4_31053 Corchorus olitorius HOM05D005657 ORTHO05D007104 6.8e-11 72.4 53 66.0
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 8.9e-11 72.0 52 61.5
MCO01G569 Micromonas commoda HOM05D005657 ORTHO05D007104 6.0e-07 59.3 43 55.8


User provided reference genes

Program Settings