Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 3.3e-175 618.2 300 100.0
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 3.9e-160 568.2 303 91.1
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 4.3e-95 352.1 239 71.1
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 1.6e-81 307.0 296 51.4
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 4.0e-80 302.4 313 50.2
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 6.7e-80 301.6 315 49.2
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 2.6e-79 299.7 315 49.8
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 4.4e-79 298.9 310 49.4
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 9.7e-79 297.7 308 50.6
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 2.8e-78 296.2 317 47.9
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 2.8e-78 296.2 310 50.6
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 6.3e-78 295.0 290 50.0
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 1.1e-77 294.3 276 51.8
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 1.8e-77 293.5 310 48.7
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.8e-77 293.5 303 50.5
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 1.8e-77 293.5 315 49.2
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 2.4e-77 293.1 310 48.7
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 2.4e-77 293.1 310 48.7
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 3.1e-77 292.7 306 50.7
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 5.3e-77 292.0 318 48.7
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 7.0e-77 291.6 306 49.0
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 9.1e-77 291.2 304 48.7
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 1.6e-76 290.4 315 47.3
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 2.0e-76 290.0 318 48.4
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 3.5e-76 289.3 310 48.4
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 7.7e-76 288.1 304 48.4
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 7.7e-76 288.1 306 49.0
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 1.7e-75 287.0 314 48.7
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 1.7e-75 287.0 316 47.5
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 2.9e-75 286.2 314 47.8
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 3.8e-75 285.8 310 47.4
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 1.9e-74 283.5 296 49.7
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 3.2e-74 282.7 309 48.2
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 3.2e-74 282.7 310 48.7
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 4.2e-74 282.3 312 48.4
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 4.2e-74 282.3 320 47.2
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 5.5e-74 282.0 318 46.9
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 7.2e-74 281.6 312 45.8
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 7.2e-74 281.6 312 47.8
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 9.4e-74 281.2 311 47.6
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 1.2e-73 280.8 307 47.2
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 2.1e-73 280.0 271 50.2
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 2.1e-73 280.0 318 46.9
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 3.6e-73 279.3 299 49.8
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 6.1e-73 278.5 310 47.4
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 8.0e-73 278.1 309 46.3
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 1.0e-72 277.7 330 45.5
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.0e-72 277.7 311 47.9
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 1.4e-72 277.3 310 47.4
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 2.3e-72 276.6 320 45.6
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 3.0e-72 276.2 293 48.5
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 4.0e-72 275.8 311 47.3
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 5.2e-72 275.4 309 47.6
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 8.8e-72 274.6 312 46.8
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 8.8e-72 274.6 312 47.1
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 2.0e-71 273.5 348 43.7
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 4.4e-71 272.3 313 47.3
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 9.8e-71 271.2 305 47.9
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 2.2e-70 270.0 305 46.9
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 2.2e-70 270.0 232 59.5
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 3.7e-70 269.2 274 48.9
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 4.8e-70 268.9 312 47.1
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 6.3e-70 268.5 234 58.5
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 8.3e-70 268.1 309 46.0
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 8.3e-70 268.1 312 46.8
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 1.8e-69 266.9 305 46.2
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 2.4e-69 266.5 297 48.8
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 2.4e-69 266.5 301 47.5
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 2.4e-69 266.5 250 56.0
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 4.1e-69 265.8 305 47.2
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 5.4e-69 265.4 305 46.9
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 1.2e-68 264.2 307 47.2
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 1.2e-68 264.2 299 46.2
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 2.7e-68 263.1 305 47.5
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 3.5e-68 262.7 305 46.2
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 4.5e-68 262.3 315 46.3
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 4.5e-68 262.3 313 46.3
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 7.7e-68 261.5 317 46.1
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 1.0e-67 261.2 312 44.9
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 1.0e-67 261.2 351 41.6
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 1.7e-67 260.4 305 47.5
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.7e-67 260.4 258 52.3
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 1.7e-67 260.4 317 44.8
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 2.2e-67 260.0 232 56.5
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 2.2e-67 260.0 312 46.2
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 6.5e-67 258.5 308 46.1
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 8.0e-65 251.5 223 55.6
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 1.7e-62 243.8 273 46.2
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 2.2e-62 243.4 314 41.7
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 4.9e-62 242.3 308 43.5
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 4.5e-60 235.7 327 41.9
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 1.3e-59 234.2 331 42.0
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 2.9e-59 233.0 315 43.8
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 3.4e-55 219.5 315 40.6
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 9.8e-55 218.0 298 43.3
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 8.3e-54 214.9 247 48.2
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 1.1e-53 214.5 319 39.8
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.4e-53 214.2 311 40.5
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 2.4e-53 213.4 220 48.2
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 4.1e-53 212.6 280 43.2
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 5.0e-51 205.7 217 48.4
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 1.0e-48 198.0 306 40.2
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 2.3e-48 196.8 175 52.6
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 6.8e-48 195.3 212 47.6
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 4.9e-46 189.1 310 39.4
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 2.0e-44 183.7 169 56.8
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 3.5e-44 183.0 208 44.2
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 6.0e-44 182.2 165 51.5
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 1.3e-43 181.0 158 53.8
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 1.7e-43 180.6 172 54.7
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 3.1e-40 169.9 308 36.4
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 7.5e-39 165.2 127 59.8
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 1.5e-31 141.0 218 35.8
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 2.2e-30 137.1 163 41.1
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 8.4e-30 135.2 185 40.0
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 9.2e-29 131.7 110 58.2
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 1.0e-27 128.3 140 47.9
SalBow2G0785 Salvia bowleyana HOM05D005657 ORTHO05D007104 9.6e-26 121.7 174 42.0
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.2e-25 121.3 220 36.8
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 2.1e-25 120.6 411 25.8
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 2.0e-23 114.0 133 42.1
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 2.0e-23 114.0 206 34.0
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 3.4e-23 113.2 142 39.4
TPR.G7274 Trifolium pratense HOM05D005657 ORTHO05D007104 7.6e-15 85.5 56 69.6
unitig_26.g9757 Utricularia gibba HOM05D005657 ORTHO05D007104 2.7e-12 77.0 65 52.3
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 4.6e-12 76.3 62 53.2
COL.COLO4_31053 Corchorus olitorius HOM05D005657 ORTHO05D007104 3.9e-11 73.2 52 67.3
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 2.8e-09 67.0 52 57.7
MCO01G569 Micromonas commoda HOM05D005657 ORTHO05D007104 2.2e-06 57.4 43 53.5
Phvul.007G245866 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 4.9e-06 56.2 47 53.2


User provided reference genes

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