Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 0.0e+00 2628.6 1395 100.0
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 0.0e+00 1786.5 1427 72.4
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 0.0e+00 1171.8 1481 51.9
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 6.3e-104 383.6 1671 30.5
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 6.3e-104 383.6 1671 30.5
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 6.3e-104 383.6 1671 30.5
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 9.1e-103 379.8 1757 30.6
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 9.4e-100 369.8 1563 31.3
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 4.2e-92 344.4 1577 32.3
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 1.2e-91 342.8 1562 30.2
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 2.0e-89 335.5 1529 29.8
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.7e-88 332.4 1515 28.8
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.1e-87 329.7 1477 30.1
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 1.6e-86 325.9 1496 30.7
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.0e-85 323.2 1490 32.1
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 3.2e-84 318.2 1470 29.3
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 4.2e-84 317.8 1471 32.2
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 1.6e-83 315.8 1508 29.5
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 2.1e-83 315.5 1473 31.4
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 4.4e-81 307.8 1493 30.4
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 1.7e-80 305.8 1608 29.8
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 3.7e-80 304.7 1529 29.1
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 1.1e-79 303.1 1535 29.4
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 2.7e-78 298.5 1489 28.9
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 3.5e-78 298.1 1592 30.6
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 1.0e-77 296.6 1475 30.0
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 5.0e-77 294.3 1505 32.5
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.9e-76 292.4 1518 29.2
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 1.2e-75 289.7 1516 31.2
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 4.7e-75 287.7 1552 28.7
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 6.1e-75 287.3 1521 31.0
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 6.1e-75 287.3 1459 29.3
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 4.0e-74 284.6 1595 29.7
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.2e-73 283.1 1532 29.2
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 2.6e-73 282.0 1510 28.0
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 2.6e-73 282.0 217 64.1
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 9.8e-73 280.0 1566 27.8
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 1.3e-72 279.6 1592 31.0
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 4.1e-71 274.6 1485 31.4
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 5.4e-71 274.2 1508 29.4
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 2.0e-70 272.3 1542 30.5
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 3.5e-70 271.6 1507 29.9
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 3.5e-70 271.6 208 66.3
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 5.9e-70 270.8 1634 28.5
Lj2C1073G13 Lonicera japonica HOM05D005457 ORTHO05D006350 5.9e-70 270.8 260 58.5
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 2.3e-69 268.9 1559 28.9
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 3.8e-69 268.1 1549 28.1
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 3.8e-69 268.1 224 62.1
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 5.0e-69 267.7 1478 30.6
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 7.2e-68 263.8 1533 30.1
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 2.8e-67 261.9 1544 31.5
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 2.8e-67 261.9 1520 30.4
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 8.0e-67 260.4 205 63.9
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 4.0e-66 258.1 1465 27.6
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 8.9e-66 256.9 1526 27.7
Cpa.g.sc112.89 Carica papaya HOM05D005457 ORTHO05D006350 1.5e-65 256.1 277 54.9
TAR623G1178 Trochodendron aralioides HOM05D005457 ORTHO05D006350 9.8e-65 253.4 287 55.1
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.7e-64 252.7 1469 29.7
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 9.2e-63 246.9 1517 27.7
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 2.7e-62 245.4 275 53.8
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 2.9e-61 241.9 1725 27.4
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 3.8e-61 241.5 170 67.6
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 3.3e-60 238.4 191 58.6
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 9.5e-60 236.9 1506 27.7
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 1.6e-59 236.1 183 61.2
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 2.1e-59 235.7 1520 30.1
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 2.8e-59 235.3 1485 26.5
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 1.8e-58 232.6 1486 28.2
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 6.8e-58 230.7 1472 28.8
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 8.9e-58 230.3 279 50.5
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 1.3e-56 226.5 1497 26.3
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 3.2e-55 221.9 1582 29.1
MBI14_g32924_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 7.8e-54 217.2 140 68.6
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 1.3e-53 216.5 232 49.6
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 6.6e-53 214.2 1142 33.6
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 1.4e-50 206.5 1564 27.9
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 2.0e-49 202.6 1429 28.6
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 2.6e-49 202.2 1562 27.0
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 5.8e-49 201.1 1718 27.9
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 7.5e-49 200.7 1478 25.4
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 9.8e-49 200.3 752 34.4
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 2.2e-48 199.1 1454 28.4
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 3.7e-48 198.4 1475 27.5
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 1.4e-47 196.4 1473 28.0
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 5.4e-47 194.5 1494 28.0
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 3.5e-46 191.8 769 31.7
CSS0035455 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 3.7e-40 171.8 1132 27.2
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 1.1e-39 170.2 843 31.4
CDE09G0137 Ceratophyllum demersum HOM05D000076 ORTHO05D001377 3.2e-39 168.7 108 63.0
Actinidia25125 Actinidia chinensis HOM05D005457 ORTHO05D006350 1.7e-37 162.9 101 70.3
A03p11920 Brassica napus HOM05D005457 ORTHO05D006350 8.6e-37 160.6 387 35.7
Lj2A1073T53 Lonicera japonica HOM05D005457 ORTHO05D006350 4.7e-35 154.8 1101 25.2
Psat5g196760 Pisum sativum HOM05D005457 ORTHO05D002728 1.4e-34 153.3 169 50.9
BolC3t13849H Brassica oleracea HOM05D005457 ORTHO05D006350 4.4e-33 148.3 471 31.0
BcaB08g36300 Brassica carinata HOM05D012589 ORTHO05D006350 1.7e-32 146.4 294 37.1
Oeu002456.1 Olea europaea HOM05D005457 ORTHO05D006350 1.4e-31 143.3 227 41.0
SEGI_21152 Sequoiadendron giganteum HOM05D005457 ORTHO05D006350 1.4e-31 143.3 169 47.3
CSS0043795 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 6.6e-29 134.4 72 80.6
CSS0046602 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 6.6e-29 134.4 72 80.6
RcHm_v2.0_Chr5g0067361 Rosa chinensis HOM05D005457 ORTHO05D006350 1.5e-28 133.3 365 33.7
BcaB01g04624 Brassica carinata HOM05D005457 ORTHO05D006350 4.3e-28 131.7 234 36.8
CSS0006949 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.1e-23 117.1 462 28.8
MELO3C020581.2 Cucumis melo HOM05D005457 ORTHO05D006350 5.4e-23 114.8 490 30.6
Potri.009G040500 Populus trichocarpa HOM05D005457 ORTHO05D006350 3.5e-22 112.1 1073 23.9
BraA03t10504Z Brassica rapa HOM05D005457 ORTHO05D006350 6.0e-22 111.3 392 29.3
Oeu017421.1 Olea europaea HOM05D005457 ORTHO05D006350 7.8e-22 110.9 369 28.5
PGSC0003DMG400006701 Solanum tuberosum HOM05D005457 ORTHO05D006350 5.6e-20 104.8 1066 25.4
Actinidia08559 Actinidia chinensis HOM05D005457 ORTHO05D006350 6.2e-19 101.3 96 54.2
DCAR_027736 Daucus carota HOM05D005457 ORTHO05D006350 5.3e-18 98.2 56 87.5
TAR623G1322 Trochodendron aralioides HOM05D005457 ORTHO05D006350 3.8e-16 92.0 287 29.3
Actinidia08557 Actinidia chinensis HOM05D005457 ORTHO05D006350 4.9e-16 91.7 418 28.2
Cpa.g.sc112.91 Carica papaya HOM05D005457 ORTHO05D006350 6.4e-16 91.3 123 42.3
MBI14_g32923_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 6.4e-16 91.3 283 29.7
CDE09G0768 Ceratophyllum demersum HOM05D005457 ORTHO05D006350 1.9e-15 89.7 112 48.2
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 2.7e-14 85.9 581 28.1
CBR_g34583 Chara braunii HOM05D005457 ORTHO05D006350 1.0e-13 84.0 114 35.1
CBR_g29779 Chara braunii HOM05D005457 ORTHO05D006350 2.3e-13 82.8 190 27.9
CBR_g34582 Chara braunii HOM05D005457 ORTHO05D006350 2.3e-13 82.8 115 33.0
CBR_g44392 Chara braunii HOM05D005457 ORTHO05D006350 2.3e-13 82.8 114 35.1
CBR_g34581 Chara braunii HOM05D005457 ORTHO05D006350 3.9e-13 82.0 131 32.8
Actinidia25123 Actinidia chinensis HOM05D005457 ORTHO05D006350 7.4e-12 77.8 962 25.1
unitig_27.g24807 Utricularia gibba HOM05D005457 ORTHO05D006350 6.2e-11 74.7 156 34.6
Duzib170G0589 Durio zibethinus HOM05D005457 ORTHO05D006350 1.4e-10 73.6 294 28.2
Eucgr.B02283 Eucalyptus grandis HOM05D005457 ORTHO05D006350 4.0e-10 72.0 1069 25.1
unitig_27.g24810 Utricularia gibba HOM05D005457 ORTHO05D006350 7.6e-09 67.8 59 52.5
AUR62020069 Chenopodium quinoa HOM05D005457 ORTHO05D006350 9.9e-09 67.4 950 23.3
Duzib170G0080 Durio zibethinus HOM05D005457 ORTHO05D006350 1.4e-07 63.5 90 43.3
Os12g0155300 Oryza sativa ssp. japonica HOM05D005457 ORTHO05D006350 1.6e-06 60.1 326 24.8
PGSC0003DMG400009632 Solanum tuberosum HOM05D005457 ORTHO05D006350 1.6e-06 60.1 48 56.2


User provided reference genes

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