Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027672 Daucus carota HOM05D008199 ORTHO05D010334 5.5e-29 130.2 61 100.0
Hma1.2p1_0727F.1_g209100 Hydrangea macrophylla HOM05D008199 ORTHO05D010334 6.3e-17 90.1 55 72.7
Dinv31422 Davidia involucrata HOM05D000953 ORTHO05D000231 3.1e-16 87.8 55 69.1
TWI38G1458 Tripterygium wilfordii HOM05D008199 ORTHO05D010334 9.0e-16 86.3 50 76.0
Sc20g0002530 Simmondsia chinensis HOM05D008199 ORTHO05D010334 1.2e-15 85.9 53 67.9
Lsat_1_v5_gn_2_117560 Lactuca sativa HOM05D008199 ORTHO05D010334 5.9e-15 83.6 61 63.9
CSS0014372 Camellia sinensis var. sinensis HOM05D008199 ORTHO05D010334 7.7e-15 83.2 58 62.1
ECA238G2613 Erigeron canadensis HOM05D008199 ORTHO05D010334 7.7e-15 83.2 58 60.3
PGR142G1326 Punica granatum HOM05D008199 ORTHO05D010334 7.7e-15 83.2 50 70.0
Prupe.2G230900 Prunus persica HOM05D008199 ORTHO05D010334 2.2e-14 81.6 47 74.5
Medtr1g115355 Medicago truncatula HOM05D008199 ORTHO05D010334 2.9e-14 81.3 51 74.5
Nn2g10469 Nelumbo nucifera HOM05D008199 ORTHO05D010334 3.8e-14 80.9 47 74.5
Potri.008G051100 Populus trichocarpa HOM05D008199 ORTHO05D010334 3.8e-14 80.9 47 74.5
Aa31LG5G20100 Aethionema arabicum HOM05D008199 ORTHO05D010334 5.0e-14 80.5 49 67.3
ClCG09G020150 Citrullus lanatus HOM05D008199 ORTHO05D010334 6.5e-14 80.1 54 64.8
THA.LOC104824262 Tarenaya hassleriana HOM05D008199 ORTHO05D010334 6.5e-14 80.1 51 64.7
Actinidia02971 Actinidia chinensis HOM05D008199 ORTHO05D010334 8.5e-14 79.7 55 65.5
PGSC0003DMG400029465 Solanum tuberosum HOM05D008199 ORTHO05D010334 8.5e-14 79.7 59 64.4
GSVIVG01016602001 Vitis vinifera HOM05D000953 ORTHO05D000231 8.5e-14 79.7 52 65.4
Atru.chr12.520 Acer truncatum HOM05D008199 ORTHO05D010334 1.1e-13 79.3 55 69.1
TAR633G0052 Trochodendron aralioides HOM05D008199 ORTHO05D010334 1.1e-13 79.3 50 68.0
C04p08150 Brassica napus HOM05D008199 ORTHO05D010334 1.4e-13 79.0 51 62.7
BolC4t22425H Brassica oleracea HOM05D008199 ORTHO05D010334 1.4e-13 79.0 51 62.7
Lj5g0016979 Lotus japonicus HOM05D008199 ORTHO05D010334 1.4e-13 79.0 53 67.9
MD01G1123400 Malus domestica HOM05D008199 ORTHO05D010334 1.4e-13 79.0 48 68.8
Actinidia07733 Actinidia chinensis HOM05D008199 ORTHO05D010334 1.9e-13 78.6 57 59.6
Actinidia34336 Actinidia chinensis HOM05D008199 ORTHO05D010334 1.9e-13 78.6 57 59.6
BcaC02g12078 Brassica carinata HOM05D008199 ORTHO05D010334 1.9e-13 78.6 48 66.7
A05p06880 Brassica napus HOM05D008199 ORTHO05D010334 1.9e-13 78.6 48 66.7
BraA05t19653Z Brassica rapa HOM05D008199 ORTHO05D010334 1.9e-13 78.6 48 66.7
Cpa.g.sc1.358 Carica papaya HOM05D008199 ORTHO05D010334 1.9e-13 78.6 50 68.0
RcHm_v2.0_Chr1g0366131 Rosa chinensis HOM05D008199 ORTHO05D010334 1.9e-13 78.6 47 72.3
CANSAT11G0099 Cannabis sativa HOM05D008199 ORTHO05D010334 2.5e-13 78.2 44 77.3
CAN.G74.25 Capsicum annuum HOM05D008199 ORTHO05D010334 3.2e-13 77.8 50 70.0
Glyma.20G099000 Glycine max HOM05D008199 ORTHO05D010334 3.2e-13 77.8 46 73.9
Lalb_Chr02g0144051 Lupinus albus HOM05D008199 ORTHO05D010334 3.2e-13 77.8 45 75.6
CARHR134390 Cardamine hirsuta HOM05D008199 ORTHO05D010334 4.2e-13 77.4 44 70.5
Cfa001517 Carpinus fangiana HOM05D008199 ORTHO05D010334 4.2e-13 77.4 44 75.0
Gohir.D04G061900 Gossypium hirsutum HOM05D008199 ORTHO05D010334 4.2e-13 77.4 53 60.4
Oeu021440.1 Olea europaea HOM05D008199 ORTHO05D010334 4.2e-13 77.4 60 58.3
Manes.07G111800 Manihot esculenta HOM05D008199 ORTHO05D010334 5.5e-13 77.0 56 64.3
Aqoxy5G00469 Aquilegia oxysepala HOM05D008199 ORTHO05D010334 7.2e-13 76.6 47 70.2
CiPaw.01G282700 Carya illinoinensis HOM05D008199 ORTHO05D010334 9.4e-13 76.3 53 64.2
Psat6g236360 Pisum sativum HOM05D008199 ORTHO05D010334 1.2e-12 75.9 44 75.0
AL4G36920 Arabidopsis lyrata HOM05D008199 ORTHO05D010334 1.6e-12 75.5 51 58.8
Gorai.012G069200 Gossypium raimondii HOM05D008199 ORTHO05D010334 1.6e-12 75.5 47 66.0
Sed0003138 Sechium edule HOM05D008199 ORTHO05D010334 1.6e-12 75.5 47 68.1
AT2G39500 Arabidopsis thaliana HOM05D008199 ORTHO05D010334 2.1e-12 75.1 51 56.9
Gohir.A05G350700 Gossypium hirsutum HOM05D008199 ORTHO05D010334 2.1e-12 75.1 47 66.0
Migut.F01496 Erythranthe guttata HOM05D008199 ORTHO05D010334 2.7e-12 74.7 55 61.8
Thecc.10G048500 Theobroma cacao HOM05D008199 ORTHO05D010334 2.7e-12 74.7 43 72.1
AL4G36900 Arabidopsis lyrata HOM05D008199 ORTHO05D010334 3.6e-12 74.3 44 65.9
Sp4g21800 Schrenkiella parvula HOM05D008199 ORTHO05D010334 3.6e-12 74.3 44 65.9
Phvul.007G011200 Phaseolus vulgaris HOM05D008199 ORTHO05D010334 7.9e-12 73.2 44 70.5
Carub.0004s2158 Capsella rubella HOM05D008199 ORTHO05D010334 1.8e-11 72.0 44 63.6
PSO339G4122 Papaver somniferum HOM05D008199 ORTHO05D010334 2.3e-11 71.6 47 63.8
Ciclev10033682m.g Citrus clementina HOM05D008199 ORTHO05D010334 3.9e-11 70.9 41 73.2
SEGI_29944 Sequoiadendron giganteum HOM05D008199 ORTHO05D010334 5.1e-11 70.5 50 60.0
MBI05_g35603_MAGBIO Magnolia biondii HOM05D008199 ORTHO05D010334 6.7e-11 70.1 43 65.1
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 6.7e-11 70.1 47 61.7
COL.COLO4_14948 Corchorus olitorius HOM05D008199 ORTHO05D010334 8.8e-11 69.7 44 61.4
Manes.10G036000 Manihot esculenta HOM05D008199 ORTHO05D010334 2.6e-10 68.2 38 71.1
Duzib128G0439 Durio zibethinus HOM05D008199 ORTHO05D010334 5.7e-10 67.0 50 56.0
HanXRQChr16g0507891 Helianthus annuus HOM05D008199 ORTHO05D010334 3.7e-09 64.3 51 62.7
SHI12594 Sapria himalayana HOM05D008199 ORTHO05D010334 4.5e-07 57.4 67 40.3
Pp3c9_50 Physcomitrium patens HOM05D008199 ORTHO05D010334 1.7e-06 55.5 45 57.8


User provided reference genes

Program Settings