Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027649 Daucus carota HOM05D004273 ORTHO05D005041 4.2e-232 807.7 438 100.0
Lj1A935G50 Lonicera japonica HOM05D004273 ORTHO05D005041 2.8e-58 230.3 480 35.2
Hma1.2p1_0533F.1_g173530 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 2.2e-55 220.7 513 31.2
TAR633G2082 Trochodendron aralioides HOM05D004273 ORTHO05D005041 4.6e-53 213.0 507 31.8
Dinv31442 Davidia involucrata HOM05D004273 ORTHO05D005041 1.0e-52 211.8 507 30.4
CSS0019329 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 3.1e-49 200.3 419 33.9
Dinv32873 Davidia involucrata HOM05D004273 ORTHO05D005041 1.4e-46 191.4 493 30.2
Peaxi162Scf00015g00152 Petunia axillaris HOM05D004273 ORTHO05D005041 1.2e-45 188.3 493 35.5
CAN.G1013.9 Capsicum annuum HOM05D004273 ORTHO05D005041 2.1e-45 187.6 494 32.8
PGSC0003DMG400023525 Solanum tuberosum HOM05D004273 ORTHO05D005041 3.9e-44 183.3 500 30.6
Dinv01561 Davidia involucrata HOM05D004273 ORTHO05D005041 5.1e-44 183.0 519 29.3
TAR636G0691 Trochodendron aralioides HOM05D004273 ORTHO05D005041 1.9e-43 181.0 519 30.3
Solyc05g054570.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 2.5e-43 180.6 504 30.4
Sopen05g033050 Solanum pennellii HOM05D004273 ORTHO05D005041 2.5e-43 180.6 504 31.3
Actinidia02958 Actinidia chinensis HOM05D004273 ORTHO05D005041 2.0e-40 171.0 357 33.9
Nitab4.5_0014877g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 4.5e-40 169.9 505 34.9
Hma1.2p1_0624F.1_g191440 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 5.8e-40 169.5 524 29.4
Nitab4.5_0001831g0040 Nicotiana tabacum HOM05D004273 ORTHO05D005041 5.8e-40 169.5 505 34.7
CSS0043051 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 7.6e-40 169.1 408 32.8
Eucgr.B02383 Eucalyptus grandis HOM05D004273 ORTHO05D005041 1.3e-39 168.3 411 32.1
Sed0008303 Sechium edule HOM05D004273 ORTHO05D005041 2.2e-39 167.5 518 29.7
HanXRQChr14g0458231 Helianthus annuus HOM05D004273 ORTHO05D005041 1.1e-38 165.2 411 33.1
Aqoxy4G02965 Aquilegia oxysepala HOM05D004273 ORTHO05D005041 1.9e-38 164.5 422 32.7
CiPaw.13G097100 Carya illinoinensis HOM05D004273 ORTHO05D005041 5.5e-38 162.9 513 28.3
Lj3g0025927 Lotus japonicus HOM05D004273 ORTHO05D005041 9.3e-38 162.2 486 29.4
Actinidia07045 Actinidia chinensis HOM05D004273 ORTHO05D005041 2.1e-37 161.0 441 30.6
Cc02_g08070 Coffea canephora HOM05D004273 ORTHO05D005041 3.5e-37 160.2 419 31.0
Glyma.15G039800 Glycine max HOM05D004273 ORTHO05D005041 4.6e-37 159.8 512 28.1
Lj1A156G61 Lonicera japonica HOM05D004273 ORTHO05D005041 7.9e-37 159.1 503 28.6
Cfa011474 Carpinus fangiana HOM05D004273 ORTHO05D005041 1.0e-36 158.7 510 28.6
CDE04G0924 Ceratophyllum demersum HOM05D004273 ORTHO05D005041 1.0e-36 158.7 513 27.5
Sc06g0002640 Simmondsia chinensis HOM05D004273 ORTHO05D005041 1.0e-36 158.7 381 30.4
VMungo1080G0602 Vigna mungo HOM05D004273 ORTHO05D005041 1.8e-36 157.9 382 32.2
Aa31LG4G15500 Aethionema arabicum HOM05D004273 ORTHO05D005041 2.3e-36 157.5 413 30.8
PSO339G3737 Papaver somniferum HOM05D004273 ORTHO05D005041 2.3e-36 157.5 512 27.7
Ca_19181_v3 Cicer arietinum L. HOM05D004273 ORTHO05D005041 5.1e-36 156.4 484 27.9
PGR102G1220 Punica granatum HOM05D004273 ORTHO05D005041 5.1e-36 156.4 383 32.1
Sabra16G0143100 Salix brachista HOM05D004273 ORTHO05D005041 6.7e-36 156.0 373 31.9
HanXRQChr07g0201161 Helianthus annuus HOM05D004273 ORTHO05D005041 8.7e-36 155.6 388 30.9
Cc01_g12600 Coffea canephora HOM05D004273 ORTHO05D005041 1.1e-35 155.2 520 27.7
PSO384G1393 Papaver somniferum HOM05D004273 ORTHO05D005041 1.5e-35 154.8 517 27.9
Hund04983 Selenicereus undatus HOM05D004273 ORTHO05D005041 1.5e-35 154.8 496 28.8
TWI79G1222 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 1.9e-35 154.5 405 29.9
VMungo1127G1030 Vigna mungo HOM05D004273 ORTHO05D005041 3.3e-35 153.7 218 42.2
Lalb_Chr03g0026761 Lupinus albus HOM05D004273 ORTHO05D005041 4.3e-35 153.3 485 28.9
Phvul.L004243 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 4.3e-35 153.3 389 30.6
Lalb_Chr24g0394211 Lupinus albus HOM05D004273 ORTHO05D005041 7.4e-35 152.5 508 28.0
CAN.G394.46 Capsicum annuum HOM05D004273 ORTHO05D005041 9.6e-35 152.1 521 26.7
COL.COLO4_18478 Corchorus olitorius HOM05D004273 ORTHO05D005041 1.3e-34 151.8 482 28.8
MBI05_g06541_MAGBIO Magnolia biondii HOM05D004273 ORTHO05D005041 1.3e-34 151.8 515 26.6
Oeu017093.1 Olea europaea HOM05D004273 ORTHO05D005041 1.3e-34 151.8 451 28.4
THA.LOC104799449 Tarenaya hassleriana HOM05D004273 ORTHO05D005041 2.1e-34 151.0 416 29.3
AL5G25280 Arabidopsis lyrata HOM05D004273 ORTHO05D005041 2.8e-34 150.6 418 29.9
arahy.Tifrunner.gnm1.ann1.N7EFUM Arachis hypogaea HOM05D004273 ORTHO05D005041 2.8e-34 150.6 394 30.5
Potri.001G237400 Populus trichocarpa HOM05D004273 ORTHO05D005041 2.8e-34 150.6 189 43.4
QL01p032775 Quercus lobata HOM05D004273 ORTHO05D005041 4.8e-34 149.8 518 26.8
TWI31G0117 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 4.8e-34 149.8 405 28.4
Thhalv10002507m.g Eutrema salsugineum HOM05D004273 ORTHO05D005041 6.3e-34 149.4 381 32.0
MD03G1096600 Malus domestica HOM05D004273 ORTHO05D005041 6.3e-34 149.4 491 28.9
GSVIVG01025001001 Vitis vinifera HOM05D004273 ORTHO05D005041 6.3e-34 149.4 363 30.9
ECA238G2787 Erigeron canadensis HOM05D004273 ORTHO05D005041 8.2e-34 149.1 401 30.4
AT3G46450 Arabidopsis thaliana HOM05D004273 ORTHO05D005041 1.1e-33 148.7 421 30.2
Thecc.09G325000 Theobroma cacao HOM05D004273 ORTHO05D005041 1.1e-33 148.7 484 27.3
Glyma.11G141100 Glycine max HOM05D004273 ORTHO05D005041 1.4e-33 148.3 405 30.6
ClCG02G020320 Citrullus lanatus HOM05D004273 ORTHO05D005041 1.8e-33 147.9 403 30.0
Prupe.6G080900 Prunus persica HOM05D004273 ORTHO05D005041 1.8e-33 147.9 484 27.1
DCAR_005310 Daucus carota HOM05D004273 ORTHO05D005041 3.1e-33 147.1 528 26.1
Gohir.A03G040200 Gossypium hirsutum HOM05D004273 ORTHO05D005041 4.1e-33 146.7 494 27.7
Lsat_1_v5_gn_2_116561 Lactuca sativa HOM05D004273 ORTHO05D005041 4.1e-33 146.7 412 29.9
arahy.Tifrunner.gnm1.ann1.44D9RB Arachis hypogaea HOM05D004273 ORTHO05D005041 5.3e-33 146.4 516 27.5
arahy.Tifrunner.gnm1.ann1.T00HES Arachis hypogaea HOM05D004273 ORTHO05D005041 5.3e-33 146.4 507 27.4
Migut.E01325 Erythranthe guttata HOM05D004273 ORTHO05D005041 5.3e-33 146.4 494 26.3
Atru.chr3.3842_Atru.chr3.3843 Acer truncatum HOM05D004273 ORTHO05D005041 9.0e-33 145.6 514 27.4
arahy.Tifrunner.gnm1.ann1.0ME452 Arachis hypogaea HOM05D004273 ORTHO05D005041 9.0e-33 145.6 512 27.3
CSS0029075 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 1.5e-32 144.8 514 29.0
Phvul.011G065600 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 1.5e-32 144.8 515 27.2
Gorai.003G134500 Gossypium raimondii HOM05D004273 ORTHO05D005041 2.0e-32 144.4 496 26.6
TPR.G10209 Trifolium pratense HOM05D004273 ORTHO05D005041 2.6e-32 144.1 506 26.5
MSTRG.1791 Avicennia marina HOM05D004273 ORTHO05D005041 4.5e-32 143.3 501 26.1
Haze_24060 Corylus avellana HOM05D004273 ORTHO05D005041 4.5e-32 143.3 533 26.5
Potri.009G028700 Populus trichocarpa HOM05D004273 ORTHO05D005041 4.5e-32 143.3 347 32.9
Gohir.D03G127800 Gossypium hirsutum HOM05D004273 ORTHO05D005041 5.8e-32 142.9 496 26.4
Lalb_Chr19g0137751 Lupinus albus HOM05D004273 ORTHO05D005041 5.8e-32 142.9 513 25.9
PGSC0003DMG400030404 Solanum tuberosum HOM05D004273 ORTHO05D005041 5.8e-32 142.9 524 27.3
AUR62009603 Chenopodium quinoa HOM05D004273 ORTHO05D005041 7.6e-32 142.5 381 31.5
MD11G1142800 Malus domestica HOM05D004273 ORTHO05D005041 7.6e-32 142.5 474 27.8
Sp5g15230 Schrenkiella parvula HOM05D004273 ORTHO05D005041 7.6e-32 142.5 372 32.3
Carub.0005s1225 Capsella rubella HOM05D004273 ORTHO05D005041 1.0e-31 142.1 402 30.1
Cpa.g.sc190.7 Carica papaya HOM05D004273 ORTHO05D005041 1.0e-31 142.1 519 26.2
Duzib170G0539 Durio zibethinus HOM05D004273 ORTHO05D005041 1.3e-31 141.7 180 43.9
FvH4_3g35600 Fragaria vesca HOM05D004273 ORTHO05D005041 1.3e-31 141.7 396 30.3
HanXRQChr02g0044491 Helianthus annuus HOM05D004273 ORTHO05D005041 1.3e-31 141.7 382 30.4
Manes.04G033100 Manihot esculenta HOM05D004273 ORTHO05D005041 1.7e-31 141.4 448 29.2
Rhsim13G0085100 Rhododendron simsii HOM05D004273 ORTHO05D005041 1.7e-31 141.4 522 26.6
RcHm_v2.0_Chr5g0063781 Rosa chinensis HOM05D004273 ORTHO05D005041 1.7e-31 141.4 474 28.5
CARHR155380 Cardamine hirsuta HOM05D004273 ORTHO05D005041 2.9e-31 140.6 414 29.2
Sabra09G0019900 Salix brachista HOM05D004273 ORTHO05D005041 2.9e-31 140.6 173 46.2
BcaC01g02262 Brassica carinata HOM05D004273 ORTHO05D005041 6.5e-31 139.4 399 29.1
BolC3t19006H Brassica oleracea HOM05D004273 ORTHO05D005041 6.5e-31 139.4 399 29.1
BcaB02g10723 Brassica carinata HOM05D004273 ORTHO05D005041 8.4e-31 139.0 399 29.8
FAN21G1625 Fragaria x ananassa HOM05D004273 ORTHO05D005041 8.4e-31 139.0 509 26.1
Sopen06g032400 Solanum pennellii HOM05D004273 ORTHO05D005041 1.1e-30 138.7 521 26.7
BraA06t25640Z Brassica rapa HOM05D004273 ORTHO05D005041 1.4e-30 138.3 398 29.1
Peaxi162Scf00679g00214 Petunia axillaris HOM05D004273 ORTHO05D005041 1.4e-30 138.3 459 28.1
A06p27020 Brassica napus HOM05D004273 ORTHO05D005041 1.9e-30 137.9 392 29.6
AUR62038361 Chenopodium quinoa HOM05D004273 ORTHO05D005041 2.5e-30 137.5 400 29.2
Sc06g0008260 Simmondsia chinensis HOM05D004273 ORTHO05D005041 2.5e-30 137.5 198 39.4
MELO3C013689.2 Cucumis melo HOM05D004273 ORTHO05D005041 3.2e-30 137.1 381 30.2
Solyc06g075980.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 3.2e-30 137.1 521 26.5
SalBow8G5260 Salvia bowleyana HOM05D004273 ORTHO05D005041 4.2e-30 136.7 498 25.1
vmacro03093 Vaccinium macrocarpon HOM05D004273 ORTHO05D005041 4.2e-30 136.7 212 40.6
C03p67250 Brassica napus HOM05D004273 ORTHO05D005041 5.5e-30 136.3 399 28.8
FAN11G1845 Fragaria x ananassa HOM05D004273 ORTHO05D005041 5.5e-30 136.3 374 30.2
Lsat_1_v5_gn_8_77981 Lactuca sativa HOM05D000739 ORTHO05D005041 5.5e-30 136.3 389 28.8
EL10Ac7g15984 Beta vulgaris HOM05D004273 ORTHO05D005041 9.3e-30 135.6 378 28.0
Medtr4g063605 Medicago truncatula HOM05D004273 ORTHO05D005041 9.3e-30 135.6 513 25.7
AUR62001817 Chenopodium quinoa HOM05D004273 ORTHO05D005041 1.2e-29 135.2 190 42.1
FAN16G0116 Fragaria x ananassa HOM05D004273 ORTHO05D005041 1.6e-29 134.8 190 41.1
CsaV3_6G017020 Cucumis sativus L. HOM05D004273 ORTHO05D005041 2.7e-29 134.0 371 30.2
Glyma.13G334700 Glycine max HOM05D004273 ORTHO05D005041 1.0e-28 132.1 474 28.1
Ah.08g219160 Amaranthus hybridus HOM05D004273 ORTHO05D005041 1.3e-28 131.7 219 37.0
EL10Ac2g03411 Beta vulgaris HOM05D004273 ORTHO05D005041 1.8e-28 131.3 401 28.9
Psat7g217720 Pisum sativum HOM05D004273 ORTHO05D005041 2.3e-28 131.0 220 35.0
SGA_v2.0_scaffold111G31385 Striga asiatica HOM05D004273 ORTHO05D005041 2.3e-28 131.0 485 25.6
Ah.16g107130 Amaranthus hybridus HOM05D004273 ORTHO05D005041 3.9e-28 130.2 404 26.0
ECA236G0424 Erigeron canadensis HOM05D004273 ORTHO05D005041 3.9e-28 130.2 452 26.1
Zm00001eb062630 Zea mays HOM05D004273 ORTHO05D005041 5.7e-27 126.3 376 28.2
Duzib168G0407 Durio zibethinus HOM05D004273 ORTHO05D005041 9.7e-27 125.6 477 26.8
Os03g0820900 Oryza sativa ssp. japonica HOM05D004273 ORTHO05D005041 4.8e-26 123.2 499 25.9
AUR62040968 Chenopodium quinoa HOM05D004273 ORTHO05D005041 8.2e-26 122.5 175 41.7
SEGI_06894 Sequoiadendron giganteum HOM05D004273 ORTHO05D005041 1.5e-24 118.2 406 25.6
Ciclev10028607m.g Citrus clementina HOM05D004273 ORTHO05D005041 7.7e-24 115.9 419 26.7
HPP92_019085 Vanilla planifolia HOM05D004273 ORTHO05D005041 1.1e-22 112.1 377 28.1
ATR0559G270 Amborella trichopoda HOM05D004273 ORTHO05D005041 5.5e-22 109.8 492 25.4
Nitab4.5_0001838g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 1.0e-20 105.5 401 28.4
unitig_747.g21363 Utricularia gibba HOM05D004273 ORTHO05D005041 1.5e-16 91.7 452 23.2
AagrBONN_evm.TU.Sc2ySwM_117.239 Anthoceros agrestis HOM05D004273 ORTHO05D005041 1.4e-14 85.1 135 40.7
TPR.G17285 Trifolium pratense HOM05D004273 ORTHO05D005041 4.2e-14 83.6 139 35.3
Nn2g10411 Nelumbo nucifera HOM05D004273 ORTHO05D005041 9.4e-14 82.4 405 24.9
Pp3c9_11070 Physcomitrium patens HOM05D004273 ORTHO05D005041 1.1e-11 75.5 179 32.4
SMO266G0022 Selaginella moellendorffii HOM05D004273 ORTHO05D005041 1.3e-10 72.0 142 33.1
Hund12542 Selenicereus undatus HOM05D004273 ORTHO05D005041 4.5e-08 63.5 67 47.8
Zm00001eb211720 Zea mays HOM05D004273 ORTHO05D005041 1.1e-06 58.9 41 58.5
Nitab4.5_0001304g0060 Nicotiana tabacum HOM05D004273 ORTHO05D005041 1.5e-06 58.5 48 58.3


User provided reference genes

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