Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 0.0e+00 1363.2 693 100.0
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 3.8e-118 429.9 717 40.0
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 6.3e-113 412.5 701 39.5
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 4.1e-104 383.3 704 36.9
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 1.6e-100 371.3 695 36.3
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 4.8e-97 359.8 684 36.5
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 6.3e-97 359.4 688 36.2
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 4.5e-95 353.2 708 35.7
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 2.3e-91 340.9 693 36.5
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 6.7e-91 339.3 698 34.4
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 4.4e-90 336.7 751 34.1
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 1.7e-89 334.7 688 35.5
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 1.6e-87 328.2 700 33.9
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 3.5e-87 327.0 756 34.4
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 3.8e-86 323.6 691 35.0
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 4.2e-85 320.1 695 34.4
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 5.5e-85 319.7 704 33.5
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 2.7e-84 317.4 618 35.4
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 3.6e-84 317.0 686 32.2
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 3.0e-83 313.9 690 33.9
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 2.6e-82 310.8 684 33.5
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 7.5e-82 309.3 768 31.6
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 2.2e-81 307.8 732 33.2
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 6.3e-81 306.2 706 34.8
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 1.1e-80 305.4 687 33.3
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 2.4e-80 304.3 702 32.9
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 3.1e-80 303.9 644 33.9
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 7.0e-80 302.8 688 32.4
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 2.7e-79 300.8 711 31.9
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 5.9e-79 299.7 691 32.9
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 2.9e-78 297.4 717 32.5
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 1.5e-77 295.0 679 32.7
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 4.2e-77 293.5 716 30.2
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.1e-76 291.2 777 31.3
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 8.0e-76 289.3 646 33.6
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 6.8e-75 286.2 771 32.4
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 2.6e-74 284.3 807 30.9
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 4.4e-74 283.5 749 30.8
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 4.4e-74 283.5 742 32.9
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 7.5e-74 282.7 630 33.8
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 1.7e-73 281.6 686 32.2
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 2.8e-73 280.8 849 29.1
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 6.3e-73 279.6 735 30.7
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 8.3e-73 279.3 685 32.3
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 8.3e-73 279.3 791 30.1
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 9.1e-72 275.8 784 31.2
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 9.1e-72 275.8 752 31.4
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 1.6e-71 275.0 407 40.5
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.3e-70 271.9 758 31.5
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 2.9e-70 270.8 865 28.7
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 3.8e-70 270.4 656 34.9
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 5.0e-70 270.0 668 31.7
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 8.6e-70 269.2 693 30.7
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 2.1e-68 264.6 687 30.3
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 2.3e-67 261.2 718 31.2
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 2.6e-66 257.7 679 33.0
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 3.4e-66 257.3 363 42.7
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 1.7e-65 255.0 701 31.2
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 3.7e-65 253.8 311 43.1
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 4.9e-65 253.4 807 30.4
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 8.3e-65 252.7 301 45.2
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 1.4e-64 251.9 644 31.1
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 3.2e-64 250.8 701 31.4
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 5.4e-64 250.0 570 33.0
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 7.0e-64 249.6 738 30.8
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 7.0e-64 249.6 728 29.5
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.6e-63 248.4 801 29.2
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 2.0e-63 248.1 304 44.7
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 5.0e-62 243.4 806 28.5
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 1.5e-61 241.9 687 29.7
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.9e-61 241.5 749 29.4
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 3.3e-61 240.7 667 30.0
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 3.3e-61 240.7 869 26.8
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 4.3e-61 240.4 577 31.4
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 5.6e-61 240.0 703 27.7
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 5.6e-61 240.0 312 40.4
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 3.6e-60 237.3 702 29.3
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 6.2e-60 236.5 569 32.0
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.0e-59 235.7 312 41.7
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 1.4e-59 235.3 696 29.5
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 1.4e-59 235.3 306 44.8
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 4.4e-58 230.3 685 27.9
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 7.5e-58 229.6 654 29.4
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 1.7e-57 228.4 303 42.6
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 1.7e-57 228.4 267 43.8
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 4.1e-56 223.8 307 40.1
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 7.0e-56 223.0 325 40.3
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.6e-55 221.9 686 28.9
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.6e-55 221.9 699 29.6
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 2.7e-55 221.1 710 27.9
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.6e-55 220.3 321 39.9
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 1.3e-54 218.8 683 28.4
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 3.9e-54 217.2 314 41.1
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 5.0e-54 216.9 679 29.3
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 1.1e-53 215.7 678 29.1
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.1e-53 215.7 306 38.9
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.5e-53 215.3 711 29.3
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 2.5e-53 214.5 720 28.8
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 1.6e-52 211.8 678 28.3
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.7e-52 210.3 306 38.6
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 4.7e-52 210.3 269 43.1
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 8.1e-52 209.5 690 28.1
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.1e-51 207.6 298 39.6
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 2.9e-49 201.1 298 37.9
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 2.9e-49 201.1 308 39.6
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 3.2e-48 197.6 308 39.6
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 1.2e-47 195.7 343 36.2
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.0e-47 193.4 286 38.8
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.5e-45 188.0 268 38.8
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 2.1e-44 184.9 274 38.7
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 2.8e-44 184.5 587 28.6
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 1.8e-43 181.8 278 36.7
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 4.0e-43 180.6 304 33.9
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 4.1e-40 170.6 681 25.3
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 4.1e-40 170.6 703 27.5
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 9.2e-40 169.5 305 35.7
DCAR_030957 Daucus carota HOM05D004076 ORTHO05D004606 3.5e-39 167.5 92 97.8
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.0e-39 166.8 214 42.1
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 1.1e-37 162.5 774 25.8
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 2.5e-37 161.4 679 25.3
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 1.6e-36 158.7 222 41.9
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.2e-34 152.5 611 27.2
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 1.0e-30 139.4 433 29.3
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 1.1e-29 136.0 267 34.8
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 3.6e-28 131.0 167 43.1
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 1.3e-25 122.5 354 32.5
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 2.2e-25 121.7 180 40.6
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 4.9e-25 120.6 160 41.2
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.6e-23 115.5 172 41.9
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 3.5e-23 114.4 190 34.7
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 3.5e-23 114.4 190 34.7
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 1.6e-20 105.5 211 35.5
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 3.6e-20 104.4 218 32.1
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 4.0e-19 100.9 152 38.8
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 7.6e-18 96.7 125 40.8
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 4.2e-16 90.9 92 45.7
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 6.7e-14 83.6 97 47.4
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 9.6e-13 79.7 180 32.8
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.6e-12 79.0 99 41.4
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 3.7e-12 77.8 193 30.6
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 1.1e-11 76.3 256 29.3
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 5.3e-11 73.9 212 29.7
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 6.9e-11 73.6 185 29.7
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 9.0e-11 73.2 188 30.3
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 2.6e-10 71.6 158 31.6
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 4.5e-10 70.9 101 40.6
Peaxi162Scf00297g01127 Petunia axillaris HOM05D004076 ORTHO05D004606 1.7e-09 68.9 126 35.7
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 2.2e-09 68.6 182 28.6
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 1.4e-08 65.9 184 28.8
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 1.6e-07 62.4 127 33.1


User provided reference genes

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