Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027526 Daucus carota HOM05D005198 ORTHO05D006839 6.8e-100 367.5 204 100.0
CSS0046337 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 6.9e-60 234.6 180 70.0
CiPaw.02G100600 Carya illinoinensis HOM05D005198 ORTHO05D006839 1.2e-59 233.8 194 68.0
Dinv33201 Davidia involucrata HOM05D005198 ORTHO05D006839 1.7e-58 229.9 200 63.5
Glyma.07G208200 Glycine max HOM05D005198 ORTHO05D006839 2.9e-58 229.2 196 59.2
Hma1.2p1_0150F.1_g066860 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 6.4e-58 228.0 177 65.0
Actinidia28982 Actinidia chinensis HOM05D005198 ORTHO05D006839 3.2e-57 225.7 195 63.1
MELO3C017760.2 Cucumis melo HOM05D005198 ORTHO05D006839 1.2e-56 223.8 195 63.6
CsaV3_4G002810 Cucumis sativus L. HOM05D005198 ORTHO05D006839 1.6e-56 223.4 195 63.6
TAR365G0102 Trochodendron aralioides HOM05D005198 ORTHO05D006839 7.9e-56 221.1 197 62.4
ClCG07G015220 Citrullus lanatus HOM05D005198 ORTHO05D006839 2.3e-55 219.5 195 62.6
Lj1g0021010 Lotus japonicus HOM05D005198 ORTHO05D006839 3.0e-55 219.2 178 60.1
VMungo0251G3269 Vigna mungo HOM05D005198 ORTHO05D006839 5.1e-55 218.4 178 61.2
arahy.Tifrunner.gnm1.ann1.Q28JUU Arachis hypogaea HOM05D005198 ORTHO05D006839 8.7e-55 217.6 198 58.1
Rhsim04G0106800 Rhododendron simsii HOM05D005198 ORTHO05D006839 8.7e-55 217.6 192 61.5
GSVIVG01038139001 Vitis vinifera HOM05D005198 ORTHO05D006839 1.9e-54 216.5 174 62.6
MD15G1424000 Malus domestica HOM05D005198 ORTHO05D006839 3.3e-54 215.7 178 61.8
arahy.Tifrunner.gnm1.ann1.A4X0ZB Arachis hypogaea HOM05D005198 ORTHO05D006839 4.3e-54 215.3 198 59.1
Lj3g0007177 Lotus japonicus HOM05D005198 ORTHO05D006839 7.4e-54 214.5 178 59.6
Lj6g0012253 Lotus japonicus HOM05D005198 ORTHO05D006839 7.4e-54 214.5 178 59.6
Potri.013G126300 Populus trichocarpa HOM05D005198 ORTHO05D006839 9.6e-54 214.2 195 63.1
QL10p055731 Quercus lobata HOM05D005198 ORTHO05D006839 9.6e-54 214.2 166 65.1
PGR142G0872 Punica granatum HOM05D005198 ORTHO05D006839 2.8e-53 212.6 195 62.1
Cc03_g14040 Coffea canephora HOM05D005198 ORTHO05D006839 4.8e-53 211.8 197 65.5
Phvul.003G296400 Phaseolus vulgaris HOM05D005198 ORTHO05D006839 4.8e-53 211.8 175 60.6
Sed0009334 Sechium edule HOM05D005198 ORTHO05D006839 4.8e-53 211.8 195 59.5
TWI63G1273 Tripterygium wilfordii HOM05D005198 ORTHO05D006839 4.8e-53 211.8 198 58.6
Haze_01365 Corylus avellana HOM05D005198 ORTHO05D006839 8.1e-53 211.1 170 67.6
Manes.04G036150 Manihot esculenta HOM05D005198 ORTHO05D006839 8.1e-53 211.1 178 62.4
Medtr4g087280 Medicago truncatula HOM05D005198 ORTHO05D006839 8.1e-53 211.1 195 60.0
RcHm_v2.0_Chr2g0123631 Rosa chinensis HOM05D005198 ORTHO05D006839 8.1e-53 211.1 191 62.3
Glyma.02G137200 Glycine max HOM05D005198 ORTHO05D006839 1.1e-52 210.7 174 60.9
Psat7g121400 Pisum sativum HOM05D005198 ORTHO05D006839 1.1e-52 210.7 195 60.5
Prupe.1G207000 Prunus persica HOM05D005198 ORTHO05D006839 1.4e-52 210.3 198 63.1
vmacro09048 Vaccinium macrocarpon HOM05D005198 ORTHO05D006839 1.4e-52 210.3 196 60.2
ECA232G1195 Erigeron canadensis HOM05D005198 ORTHO05D006839 2.4e-52 209.5 181 69.1
FvH4_1g25500 Fragaria vesca HOM05D005198 ORTHO05D006839 4.0e-52 208.8 175 65.1
FAN28G0627 Fragaria x ananassa HOM05D005198 ORTHO05D006839 4.0e-52 208.8 175 64.6
Nn1g09646 Nelumbo nucifera HOM05D005198 ORTHO05D006839 4.0e-52 208.8 177 61.0
CANSAT11G2028 Cannabis sativa HOM05D005198 ORTHO05D006839 6.9e-52 208.0 196 56.1
FAN19G2119 Fragaria x ananassa HOM05D005198 ORTHO05D006839 9.0e-52 207.6 170 65.9
Sabra13G0105600 Salix brachista HOM05D005198 ORTHO05D006839 9.0e-52 207.6 201 60.7
Duzib151G0783 Durio zibethinus HOM05D005198 ORTHO05D006839 5.8e-51 204.9 192 62.5
Sopen08g004940 Solanum pennellii HOM05D005198 ORTHO05D006839 1.0e-50 204.1 189 63.0
Gohir.A02G009975 Gossypium hirsutum HOM05D005198 ORTHO05D006839 1.3e-50 203.8 178 63.5
Hund03196 Selenicereus undatus HOM05D005198 ORTHO05D006839 2.2e-50 203.0 195 57.4
SGA_v2.0_scaffold12G06184 Striga asiatica HOM05D005198 ORTHO05D006839 2.9e-50 202.6 177 64.4
FAN23G1744 Fragaria x ananassa HOM05D005198 ORTHO05D006839 3.8e-50 202.2 170 60.0
Thecc.01G302200 Theobroma cacao HOM05D005198 ORTHO05D006839 3.8e-50 202.2 162 62.3
Aqoxy2G02750 Aquilegia oxysepala HOM05D005198 ORTHO05D006839 4.9e-50 201.8 196 58.7
HanXRQChr15g0483441 Helianthus annuus HOM05D005198 ORTHO05D006839 1.1e-49 200.7 183 65.0
Ah.13g073540 Amaranthus hybridus HOM05D005198 ORTHO05D006839 2.5e-49 199.5 201 58.7
Solyc08g014060.4 Solanum lycopersicum HOM05D005198 ORTHO05D006839 3.2e-49 199.1 195 57.9
Eucgr.H00311 Eucalyptus grandis HOM05D005198 ORTHO05D006839 1.6e-48 196.8 179 62.0
Gorai.005G012500 Gossypium raimondii HOM05D005198 ORTHO05D006839 2.1e-48 196.4 178 61.8
Oeu020813.1 Olea europaea HOM05D005198 ORTHO05D006839 2.1e-48 196.4 145 65.5
Ciclev10019752m.g Citrus clementina HOM05D005198 ORTHO05D006839 2.7e-48 196.1 196 56.6
Gohir.D02G010200 Gossypium hirsutum HOM05D005198 ORTHO05D006839 3.5e-48 195.7 178 61.2
Lalb_Chr09g0328121 Lupinus albus HOM05D005198 ORTHO05D006839 7.9e-48 194.5 163 60.7
TPR.G23517 Trifolium pratense HOM05D005198 ORTHO05D006839 1.0e-47 194.1 162 58.6
CAN.G1411.3 Capsicum annuum HOM05D005198 ORTHO05D006839 1.3e-47 193.7 158 63.3
Sp5g28150 Schrenkiella parvula HOM05D005198 ORTHO05D006839 1.8e-47 193.4 178 55.6
Eucgr.L01724 Eucalyptus grandis HOM05D005198 ORTHO05D006839 3.0e-47 192.6 172 62.2
Lsat_1_v5_gn_9_61481 Lactuca sativa HOM05D005198 ORTHO05D006839 3.0e-47 192.6 180 65.0
Aa31LG4G3470 Aethionema arabicum HOM05D005198 ORTHO05D006839 3.9e-47 192.2 198 58.1
AUR62002390 Chenopodium quinoa HOM05D005198 ORTHO05D006839 3.9e-47 192.2 192 54.7
PSO732G0749 Papaver somniferum HOM05D005198 ORTHO05D006839 3.9e-47 192.2 196 55.6
PSO675G4502 Papaver somniferum HOM05D005198 ORTHO05D006839 5.1e-47 191.8 196 55.1
AL2G32950 Arabidopsis lyrata HOM05D005198 ORTHO05D006839 1.9e-46 189.9 178 55.1
Nitab4.5_0011921g0010 Nicotiana tabacum HOM05D005198 ORTHO05D006839 1.9e-46 189.9 166 57.2
unitig_92.g28214 Utricularia gibba HOM05D005198 ORTHO05D006839 7.4e-46 188.0 154 61.7
Lalb_Chr16g0384471 Lupinus albus HOM05D005198 ORTHO05D006839 1.3e-45 187.2 141 63.1
AT1G73180 Arabidopsis thaliana HOM05D005198 ORTHO05D006839 1.6e-45 186.8 178 53.9
Carub.0002s1997 Capsella rubella HOM05D005198 ORTHO05D006839 1.6e-45 186.8 184 53.3
CARHR066180 Cardamine hirsuta HOM05D005198 ORTHO05D006839 2.1e-45 186.4 179 55.9
C06p34190 Brassica napus HOM05D005198 ORTHO05D006839 3.7e-45 185.7 178 55.6
THA.LOC104813938 Tarenaya hassleriana HOM05D005198 ORTHO05D006839 3.7e-45 185.7 175 66.3
Dinv07059 Davidia involucrata HOM05D005198 ORTHO05D006839 4.8e-45 185.3 167 57.5
BcaC08g45664 Brassica carinata HOM05D005198 ORTHO05D006839 1.1e-44 184.1 155 60.0
Thhalv10018413m.g Eutrema salsugineum HOM05D005198 ORTHO05D006839 1.4e-44 183.7 183 52.5
Lj4A14T50 Lonicera japonica HOM05D005198 ORTHO05D006839 2.0e-43 179.9 120 71.7
CDE04G2667 Ceratophyllum demersum HOM05D005198 ORTHO05D006839 7.6e-43 177.9 194 51.5
FAN26G1320 Fragaria x ananassa HOM05D005198 ORTHO05D006839 1.3e-42 177.2 232 48.7
SHI30329 Sapria himalayana HOM05D005198 ORTHO05D000023 1.7e-42 176.8 163 56.4
Zm00001eb246620 Zea mays HOM05D005198 ORTHO05D006839 3.8e-42 175.6 181 51.4
COL.COLO4_23329 Corchorus olitorius HOM05D005198 ORTHO05D006839 8.5e-42 174.5 161 61.5
Nitab4.5_0000122g0140 Nicotiana tabacum HOM05D005198 ORTHO05D006839 1.1e-41 174.1 148 61.5
SalBow3G0226 Salvia bowleyana HOM05D005198 ORTHO05D006839 2.5e-41 172.9 159 57.2
A07p29920 Brassica napus HOM05D005198 ORTHO05D006839 1.2e-40 170.6 180 53.3
MBI11_g23941_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 2.1e-40 169.9 149 59.7
Migut.G01222 Erythranthe guttata HOM05D005198 ORTHO05D006839 3.6e-40 169.1 145 60.0
Peaxi162Scf00075g01544 Petunia axillaris HOM05D005198 ORTHO05D006839 3.6e-40 169.1 161 53.4
ATR0733G245 Amborella trichopoda HOM05D005198 ORTHO05D006839 3.3e-38 162.5 165 54.5
AUR62023798 Chenopodium quinoa HOM05D005198 ORTHO05D006839 3.3e-38 162.5 202 54.0
BraA07t30630Z Brassica rapa HOM05D005198 ORTHO05D006839 2.8e-37 159.5 179 52.0
SEGI_32957 Sequoiadendron giganteum HOM05D005198 ORTHO05D006839 2.8e-37 159.5 211 51.2
CSS0015120 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 3.8e-34 149.1 129 67.4
Atru.BG.83.p Acer truncatum HOM05D005198 ORTHO05D006839 1.2e-32 144.1 164 51.8
BolC6t38540H Brassica oleracea HOM05D005198 ORTHO05D006839 1.6e-32 143.7 180 50.0
Hma1.2p1_0554F.1_g177930 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 1.1e-25 120.9 161 45.3
Pp3c6_14240 Physcomitrium patens HOM05D005198 ORTHO05D006839 1.9e-25 120.2 188 40.4
Ca_18641_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 7.9e-24 114.8 96 57.3
Medtr5g091610 Medicago truncatula HOM05D001363 ORTHO05D006839 3.0e-23 112.8 65 73.8
Mapoly0011s0080 Marchantia polymorpha HOM05D005198 ORTHO05D006839 2.0e-22 110.2 152 43.4
SMO145G0177 Selaginella moellendorffii HOM05D005198 ORTHO05D006839 5.3e-20 102.1 180 38.3
Cpa.g.sc9.361 Carica papaya HOM05D005198 ORTHO05D006839 3.5e-19 99.4 181 41.4
Ca_25383_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 5.9e-19 98.6 67 70.1
CBR_g53754 Chara braunii HOM05D005198 ORTHO05D006839 9.4e-17 91.3 196 31.1
CSS0050366 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 1.2e-16 90.9 51 76.5
Hma1.2p1_0150F.1_g066870 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 4.7e-16 89.0 51 76.5
Lsat_1_v5_gn_5_150841 Lactuca sativa HOM05D005198 ORTHO05D004031 4.7e-16 89.0 66 62.1
BolC2t09126H Brassica oleracea HOM05D005198 ORTHO05D042013 1.1e-12 77.8 129 41.9
C02p30710 Brassica napus HOM05D005198 ORTHO05D042013 2.4e-12 76.6 129 41.1
Os02g0606100 Oryza sativa ssp. japonica HOM05D005198 ORTHO05D006839 3.8e-10 69.3 112 42.9
Eucgr.H00310 Eucalyptus grandis HOM05D005198 ORTHO05D006839 1.2e-08 64.3 77 46.8
Cre08.g375900 Chlamydomonas reinhardtii HOM05D005198 ORTHO05D006839 2.7e-08 63.2 184 29.9
MCO01G167 Micromonas commoda HOM05D005198 ORTHO05D006839 2.7e-08 63.2 55 45.5
SGA_v2.0_scaffold649G53360 Striga asiatica HOM05D005198 ORTHO05D006839 8.0e-08 61.6 46 60.9
PRCOL_00000684 Prasinoderma coloniale HOM05D005198 ORTHO05D006839 1.2e-06 57.8 62 43.5
Lj4A14T51 Lonicera japonica HOM05D005198 ORTHO05D006839 2.6e-06 56.6 62 69.4


User provided reference genes

Program Settings