Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 2.9e-79 298.5 151 100.0
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 5.3e-17 91.7 170 39.4
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 5.3e-17 91.7 170 39.4
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 4.5e-16 88.6 170 38.2
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 2.9e-15 85.9 157 38.9
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 6.5e-15 84.7 184 37.5
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 6.5e-15 84.7 165 41.8
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 8.5e-15 84.3 135 44.4
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 8.5e-15 84.3 188 38.8
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 1.5e-14 83.6 167 36.5
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 1.9e-14 83.2 128 43.0
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 3.2e-14 82.4 163 38.7
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 4.2e-14 82.0 178 36.0
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 4.2e-14 82.0 174 39.7
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 5.5e-14 81.6 74 58.1
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 9.4e-14 80.9 88 52.3
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 1.2e-13 80.5 79 55.7
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 1.2e-13 80.5 164 37.8
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.6e-13 80.1 74 56.8
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 1.6e-13 80.1 174 39.1
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 2.1e-13 79.7 183 39.9
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 2.1e-13 79.7 93 45.2
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 2.7e-13 79.3 107 48.6
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.7e-13 79.3 131 42.0
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 2.7e-13 79.3 189 40.7
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 4.7e-13 78.6 85 51.8
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 4.7e-13 78.6 163 36.2
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 6.1e-13 78.2 73 54.8
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 8.0e-13 77.8 182 37.9
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 8.0e-13 77.8 183 39.3
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 8.0e-13 77.8 161 40.4
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 8.0e-13 77.8 66 57.6
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 8.0e-13 77.8 76 55.3
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 8.0e-13 77.8 76 55.3
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 1.0e-12 77.4 69 56.5
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 1.0e-12 77.4 184 36.4
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 1.0e-12 77.4 82 52.4
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 1.4e-12 77.0 88 50.0
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 1.8e-12 76.6 162 40.1
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 1.8e-12 76.6 167 37.7
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 2.3e-12 76.3 77 53.2
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 2.3e-12 76.3 67 58.2
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 3.0e-12 75.9 170 39.4
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 4.0e-12 75.5 81 46.9
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 5.2e-12 75.1 100 44.0
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 5.2e-12 75.1 79 59.5
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 5.2e-12 75.1 162 38.9
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 6.7e-12 74.7 184 36.4
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 6.7e-12 74.7 184 38.0
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 6.7e-12 74.7 184 38.0
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 6.7e-12 74.7 184 36.4
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 6.7e-12 74.7 184 38.0
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 6.7e-12 74.7 76 55.3
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 8.8e-12 74.3 184 36.4
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 8.8e-12 74.3 184 36.4
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 1.5e-11 73.6 154 39.6
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 2.0e-11 73.2 88 45.5
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 2.0e-11 73.2 88 46.6
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 2.0e-11 73.2 172 37.2
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 2.0e-11 73.2 172 37.2
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 2.6e-11 72.8 179 36.9
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 2.6e-11 72.8 179 36.9
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 4.4e-11 72.0 92 47.8
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 4.4e-11 72.0 175 35.4
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 4.4e-11 72.0 175 35.4
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 4.4e-11 72.0 175 35.4
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 4.4e-11 72.0 104 43.3
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 5.7e-11 71.6 179 34.1
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 5.7e-11 71.6 80 47.5
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 5.7e-11 71.6 162 33.3
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 5.7e-11 71.6 170 37.6
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 7.5e-11 71.2 179 36.3
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 7.5e-11 71.2 179 36.3
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 9.7e-11 70.9 170 38.2
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 9.7e-11 70.9 174 36.2
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 9.7e-11 70.9 79 57.0
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 9.7e-11 70.9 69 53.6
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 1.3e-10 70.5 179 35.2
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.3e-10 70.5 169 36.1
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 1.3e-10 70.5 170 38.2
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 1.7e-10 70.1 154 39.0
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 1.7e-10 70.1 182 34.1
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 2.8e-10 69.3 100 44.0
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 3.7e-10 68.9 84 45.2
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 3.7e-10 68.9 80 50.0
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 3.7e-10 68.9 70 51.4
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 4.8e-10 68.6 82 46.3
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 4.8e-10 68.6 162 32.7
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 4.8e-10 68.6 156 34.6
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 4.8e-10 68.6 173 33.5
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 4.8e-10 68.6 154 37.0
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 6.3e-10 68.2 179 36.3
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 1.4e-09 67.0 163 35.0
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 1.4e-09 67.0 75 52.0
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 1.8e-09 66.6 106 43.4
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 2.4e-09 66.2 72 50.0
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 2.4e-09 66.2 178 31.5
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 2.4e-09 66.2 162 34.6
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 2.4e-09 66.2 66 51.5
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 4.1e-09 65.5 167 36.5
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 5.3e-09 65.1 73 50.7
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 5.3e-09 65.1 171 33.9
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 5.3e-09 65.1 171 33.9
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 5.3e-09 65.1 168 35.1
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 7.0e-09 64.7 80 48.8
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 9.1e-09 64.3 80 48.8
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 9.1e-09 64.3 97 40.2
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 9.1e-09 64.3 171 33.9
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 9.1e-09 64.3 171 33.9
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 9.1e-09 64.3 153 35.9
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 9.1e-09 64.3 165 37.6
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 1.6e-08 63.5 88 44.3
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 2.0e-08 63.2 159 32.7
HanXRQChr17g0545191 Helianthus annuus HOM05D005097 ORTHO05D006186 2.7e-08 62.8 72 54.2
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 2.7e-08 62.8 142 39.4
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 4.5e-08 62.0 176 33.5
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 5.9e-08 61.6 99 40.4
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 5.9e-08 61.6 164 33.5
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 7.7e-08 61.2 170 31.8
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 7.7e-08 61.2 179 35.2
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 1.0e-07 60.8 189 34.4
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 1.7e-07 60.1 72 47.2
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 1.7e-07 60.1 165 33.9
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 2.2e-07 59.7 186 36.6
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 3.8e-07 58.9 170 33.5
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 5.0e-07 58.5 77 48.1
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 8.5e-07 57.8 161 32.3
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 1.1e-06 57.4 171 35.7
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.1e-06 57.4 130 36.2
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.1e-06 57.4 76 43.4
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 1.5e-06 57.0 180 33.9
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.5e-06 57.0 70 50.0
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 1.9e-06 56.6 188 31.9
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 5.5e-06 55.1 73 46.6


User provided reference genes

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