Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 4.9e-185 651.0 323 100.0
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 8.7e-142 507.3 306 79.7
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 5.6e-141 504.6 303 81.5
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 5.6e-141 504.6 317 77.0
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 6.2e-140 501.1 311 78.1
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 1.8e-139 499.6 315 77.1
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 6.9e-139 497.7 318 76.7
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 3.4e-138 495.4 334 74.3
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 1.3e-137 493.4 320 76.2
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 1.3e-137 493.4 315 75.6
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 1.9e-136 489.6 308 77.3
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 1.9e-136 489.6 320 74.1
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 1.2e-135 486.9 320 73.8
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 2.7e-135 485.7 299 78.3
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 3.5e-135 485.3 318 76.1
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 3.5e-135 485.3 304 77.3
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 1.8e-134 483.0 320 73.1
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 2.3e-134 482.6 306 76.5
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 3.0e-134 482.3 320 73.4
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 5.1e-134 481.5 316 74.1
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 6.7e-134 481.1 306 77.1
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 2.5e-133 479.2 315 74.6
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 3.3e-133 478.8 320 74.1
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 5.7e-133 478.0 290 79.7
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 2.8e-132 475.7 320 71.6
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 2.8e-132 475.7 320 73.8
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 2.8e-132 475.7 305 77.0
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 4.8e-132 474.9 302 77.2
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 6.3e-132 474.6 306 73.2
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 6.3e-132 474.6 310 74.2
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 6.3e-132 474.6 306 75.8
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 8.2e-132 474.2 311 74.3
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 1.8e-131 473.0 303 75.9
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 5.3e-131 471.5 318 70.1
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 5.3e-131 471.5 317 75.1
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 6.9e-131 471.1 319 72.7
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 9.0e-131 470.7 315 73.0
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 1.2e-130 470.3 308 73.4
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 2.6e-130 469.2 323 70.9
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 2.6e-130 469.2 302 76.5
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 4.5e-130 468.4 301 76.4
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 5.0e-129 464.9 298 75.5
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 5.0e-129 464.9 316 70.6
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 6.5e-129 464.5 304 75.3
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 8.5e-129 464.2 314 74.8
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 8.5e-129 464.2 311 72.3
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 1.1e-128 463.8 313 72.5
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 1.1e-128 463.8 318 73.9
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 1.4e-128 463.4 304 75.3
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 7.2e-128 461.1 316 71.5
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 1.6e-127 459.9 323 70.3
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 2.7e-127 459.1 311 71.7
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 3.6e-127 458.8 323 69.0
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 4.6e-127 458.4 317 70.3
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 6.1e-127 458.0 322 69.9
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 7.9e-127 457.6 314 71.0
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 1.8e-126 456.4 305 73.4
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 3.9e-126 455.3 312 72.8
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 5.1e-126 454.9 324 68.8
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 6.7e-126 454.5 318 72.0
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.1e-125 453.8 320 70.0
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.1e-125 453.8 320 70.0
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.5e-125 453.4 322 69.3
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 1.9e-125 453.0 311 70.1
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 1.9e-125 453.0 299 72.9
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 5.7e-125 451.4 322 68.6
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 5.7e-125 451.4 304 74.0
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.6e-124 449.9 303 71.9
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.6e-124 449.9 323 68.7
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 3.7e-124 448.7 325 68.3
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 3.7e-124 448.7 325 68.3
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 3.7e-124 448.7 309 70.2
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 4.8e-124 448.4 375 63.5
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 6.9e-123 444.5 323 69.0
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 2.6e-122 442.6 311 72.3
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 1.3e-121 440.3 283 76.0
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 1.3e-121 440.3 311 70.4
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 8.5e-121 437.6 320 69.1
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 1.4e-120 436.8 311 69.5
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 5.5e-120 434.9 299 70.6
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.2e-119 433.7 319 67.1
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 6.1e-119 431.4 305 68.9
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 3.9e-118 428.7 323 65.6
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 6.7e-118 427.9 317 68.1
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 1.1e-117 427.2 307 68.4
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.5e-117 426.8 317 67.5
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 4.8e-116 421.8 297 70.0
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 4.1e-115 418.7 319 67.1
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 1.0e-110 404.1 307 63.2
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 2.6e-109 399.4 319 64.9
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 4.4e-109 398.7 294 66.3
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 4.4e-109 398.7 274 69.7
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 4.4e-109 398.7 274 69.7
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 4.8e-108 395.2 323 61.0
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.1e-104 384.0 262 70.6
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 3.5e-98 362.5 297 60.6
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 2.9e-97 359.4 284 62.0
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 2.5e-96 356.3 227 75.8
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 2.7e-95 352.8 295 59.0
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.4e-94 350.5 230 74.8
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 3.1e-91 339.3 302 53.6
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 4.1e-91 339.0 302 54.0
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 2.0e-90 336.7 299 52.5
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 7.7e-90 334.7 286 57.7
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.3e-89 333.2 299 52.2
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 6.5e-89 331.6 299 51.8
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 3.2e-88 329.3 302 53.0
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 4.2e-88 328.9 299 52.8
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 7.2e-88 328.2 299 52.8
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 9.5e-88 327.8 291 51.5
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 2.1e-87 326.6 299 52.5
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.6e-87 325.9 298 52.3
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 6.1e-87 325.1 297 54.2
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 6.1e-87 325.1 300 52.3
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.0e-86 324.3 299 52.5
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.8e-86 323.6 298 51.3
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.0e-86 322.8 297 51.5
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 4.0e-86 322.4 231 68.8
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.0e-85 320.1 299 50.8
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 3.4e-85 319.3 297 54.2
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 4.4e-85 318.9 299 52.5
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 7.5e-85 318.2 299 51.2
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 9.8e-85 317.8 299 52.5
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 9.8e-85 317.8 299 52.5
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.3e-84 317.4 299 52.2
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.8e-84 316.2 299 51.5
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 4.9e-84 315.5 304 51.0
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 1.1e-83 314.3 272 53.3
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.4e-83 313.2 297 51.9
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 5.9e-82 308.5 300 51.0
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.0e-81 307.8 297 49.5
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.0e-81 307.8 298 51.0
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 1.7e-81 307.0 291 50.5
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.3e-81 306.6 298 48.3
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 1.1e-80 304.3 299 50.8
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.1e-80 304.3 218 67.9
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 2.5e-80 303.1 298 51.0
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 4.3e-80 302.4 298 50.7
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 5.6e-80 302.0 300 50.0
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 1.0e-78 297.7 302 46.4
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 2.2e-76 290.0 298 48.0
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 7.8e-74 281.6 274 49.3
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 2.3e-70 270.0 298 47.7
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 6.8e-70 268.5 284 48.2
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 1.3e-68 264.2 176 72.2
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 1.7e-68 263.8 277 48.0
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 1.0e-65 254.6 349 39.3
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 2.5e-64 250.0 283 48.4
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 3.4e-61 239.6 244 48.8
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 1.2e-55 221.1 195 60.0
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 4.7e-55 219.2 298 41.3
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 6.8e-54 215.3 219 48.9
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 1.5e-53 214.2 201 51.7
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 1.5e-53 214.2 201 51.7
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 4.1e-51 206.1 202 54.5
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 5.1e-49 199.1 316 38.0
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 1.8e-38 164.1 128 54.7
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 4.5e-37 159.5 128 53.9
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 4.5e-37 159.5 128 53.9
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.9e-35 154.1 298 33.6
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 9.3e-35 151.8 148 48.6
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.3e-31 141.4 82 80.5
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-30 138.3 157 47.1
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 6.9e-30 135.6 111 50.5
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 3.1e-22 110.2 94 61.7
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 2.7e-18 97.1 317 27.8
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 7.7e-13 79.0 77 57.1


User provided reference genes

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