Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 0.0e+00 1622.8 843 100.0
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 4.3e-281 971.5 870 61.4
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 1.4e-276 956.4 876 60.4
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 7.5e-270 934.1 875 59.5
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 9.2e-268 927.2 864 58.9
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 6.4e-261 904.4 892 56.1
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 8.3e-261 904.0 869 57.2
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 8.3e-261 904.0 871 57.7
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 2.1e-259 899.4 860 58.6
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.5e-257 893.3 884 57.2
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 2.4e-255 885.9 874 57.1
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 3.1e-255 885.6 887 56.7
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 3.1e-255 885.6 858 57.3
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 1.2e-254 883.6 867 57.0
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 2.2e-253 879.4 858 57.2
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 4.9e-253 878.2 863 56.4
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 3.2e-252 875.5 852 58.1
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 3.2e-252 875.5 872 56.4
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 4.1e-252 875.2 762 60.8
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 9.2e-252 874.0 836 57.3
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.2e-251 873.6 876 56.2
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 7.8e-251 870.9 845 57.3
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 1.3e-250 870.2 865 56.0
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 2.3e-250 869.4 849 56.8
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 8.7e-250 867.5 842 57.1
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 1.2e-248 863.6 765 60.4
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.1e-248 862.8 848 57.2
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 2.1e-248 862.8 852 56.6
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 4.7e-248 861.7 874 56.1
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 4.0e-247 858.6 835 56.9
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 6.9e-247 857.8 849 57.0
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 2.6e-246 855.9 871 54.9
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 3.4e-246 855.5 866 55.0
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 4.4e-246 855.1 718 64.6
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 2.2e-245 852.8 846 56.7
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 3.8e-245 852.0 864 55.7
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 6.4e-245 851.3 858 56.5
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.1e-244 850.5 864 55.6
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 2.4e-244 849.4 860 54.8
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 2.4e-244 849.4 863 55.4
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 4.2e-244 848.6 848 56.8
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 2.1e-243 846.3 756 61.8
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 2.7e-243 845.9 837 56.2
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 2.7e-243 845.9 862 55.0
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 6.0e-243 844.7 874 54.1
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 2.3e-242 842.8 888 53.6
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 8.7e-242 840.9 864 55.1
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 1.1e-241 840.5 873 55.0
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.1e-241 840.5 851 56.5
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 1.9e-241 839.7 879 54.9
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 9.6e-241 837.4 990 50.5
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 5.3e-239 831.6 862 56.1
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 9.0e-239 830.9 873 55.3
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 2.6e-238 829.3 872 54.4
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 7.6e-238 827.8 776 57.2
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 2.2e-237 826.2 876 53.1
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 2.9e-237 825.9 941 51.8
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 3.8e-237 825.5 863 56.9
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 1.1e-236 823.9 901 53.6
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 1.1e-236 823.9 867 53.4
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 1.6e-235 820.1 863 53.7
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 4.6e-235 818.5 872 53.8
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 7.9e-235 817.8 875 53.9
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 1.0e-234 817.4 855 56.1
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 1.0e-234 817.4 852 54.1
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 3.0e-234 815.8 870 53.6
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 5.1e-234 815.1 865 54.1
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 1.9e-233 813.1 875 53.7
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 4.3e-233 812.0 865 53.8
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 7.4e-233 811.2 860 53.1
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 3.7e-232 808.9 868 53.5
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 6.4e-229 798.1 842 53.7
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 2.4e-228 796.2 861 54.0
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 7.1e-228 794.7 874 51.9
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 4.6e-227 792.0 861 53.4
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 6.0e-227 791.6 1022 47.4
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 3.0e-226 789.3 794 55.4
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 5.1e-226 788.5 867 52.5
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 5.1e-226 788.5 918 52.1
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 1.9e-225 786.6 836 52.6
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 2.5e-225 786.2 871 52.4
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 6.2e-224 781.6 873 51.9
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 6.2e-224 781.6 746 59.4
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 9.0e-223 777.7 871 51.7
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 1.2e-222 777.3 871 51.7
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 2.9e-221 772.7 868 53.2
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.4e-220 770.4 844 53.8
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 1.9e-217 760.0 782 55.0
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 9.7e-217 757.7 803 51.8
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 8.2e-216 754.6 829 52.0
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 5.3e-215 751.9 731 56.1
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 1.5e-214 750.4 872 50.7
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 6.5e-213 745.0 837 51.6
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 2.1e-211 740.0 835 51.3
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 3.0e-210 736.1 827 51.0
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 6.7e-210 734.9 922 47.8
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 1.5e-209 733.8 827 51.0
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 1.9e-209 733.4 867 50.2
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 1.7e-208 730.3 866 49.8
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 3.1e-207 726.1 883 49.0
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 5.3e-207 725.3 832 51.1
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 6.9e-207 724.9 833 50.7
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 6.7e-202 708.4 866 49.0
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 5.7e-201 705.3 608 61.8
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 1.7e-200 703.7 829 49.9
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.7e-200 703.7 875 47.4
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 2.8e-200 703.0 843 48.8
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 3.7e-200 702.6 778 52.3
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 5.0e-197 692.2 856 48.2
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 3.3e-193 679.5 789 49.6
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 4.4e-193 679.1 806 49.8
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 5.7e-193 678.7 876 48.1
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 5.3e-191 672.2 729 52.5
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 4.5e-190 669.1 834 48.0
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 1.0e-189 667.9 816 48.8
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 1.0e-186 657.9 744 51.5
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 8.8e-186 654.8 552 63.9
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 2.2e-176 623.6 819 46.8
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 1.7e-173 614.0 874 43.7
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 3.6e-171 606.3 832 44.0
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 2.6e-169 600.1 871 43.6
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 1.3e-168 597.8 795 45.9
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 5.9e-166 589.0 549 58.7
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 8.9e-162 575.1 810 44.6
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 1.2e-158 564.7 878 43.6
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 1.2e-150 538.1 441 63.7
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 6.6e-149 532.3 756 43.3
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 1.5e-148 531.2 750 44.0
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 1.8e-146 524.2 948 37.1
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 8.6e-141 505.4 497 55.1
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 3.2e-127 460.3 901 34.4
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 3.2e-127 460.3 495 50.7
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 5.1e-117 426.4 568 46.0
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 4.3e-108 396.7 536 44.4
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 6.5e-104 382.9 806 35.1
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 1.4e-98 365.2 650 37.1
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 1.2e-89 335.5 648 36.9
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 3.6e-86 323.9 424 46.2
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 4.1e-74 283.9 367 49.0
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.5e-63 248.8 283 50.5
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 2.1e-62 245.0 312 46.8
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 4.0e-61 240.7 248 53.6
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.5e-47 194.9 193 59.6
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 8.3e-43 179.9 247 45.7
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 4.6e-41 174.1 170 58.8
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 1.4e-34 152.5 138 58.0
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 7.8e-25 120.2 333 31.2
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 1.0e-24 119.8 166 42.2
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 7.3e-23 113.6 390 29.7
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 7.3e-23 113.6 390 29.7
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 2.6e-20 105.1 181 36.5
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 3.8e-19 101.3 188 38.3
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 3.8e-19 101.3 188 38.3
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 1.3e-16 92.8 170 41.2
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 1.1e-15 89.7 135 43.0
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 1.1e-15 89.7 104 52.9
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 2.5e-15 88.6 58 74.1
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 2.1e-14 85.5 166 36.1
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 3.4e-12 78.2 92 48.9
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 5.8e-12 77.4 63 58.7
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 6.4e-11 73.9 153 34.0
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 8.4e-11 73.6 63 55.6
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 5.4e-10 70.9 206 30.6
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 7.1e-10 70.5 240 24.6
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 6.0e-09 67.4 37 83.8
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-07 63.2 47 61.7
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 1.9e-07 62.4 46 63.0
Dinv34201 Davidia involucrata HOM05D004054 ORTHO05D004945 7.3e-07 60.5 53 60.4
Aqoxy4G02344 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 4.8e-06 57.8 77 42.9


User provided reference genes

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