Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 3.5e-58 228.0 112 100.0
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 3.5e-58 228.0 112 100.0
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 4.4e-24 114.8 124 54.0
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 3.7e-23 111.7 111 54.1
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 3.1e-22 108.6 116 56.9
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 4.1e-22 108.2 102 58.8
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 2.6e-21 105.5 108 51.9
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 5.9e-21 104.4 104 55.8
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 5.9e-21 104.4 110 58.2
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 1.0e-20 103.6 110 55.5
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 1.0e-20 103.6 114 51.8
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 2.2e-20 102.4 106 55.7
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 1.5e-19 99.8 104 55.8
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 3.2e-19 98.6 101 59.4
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 4.2e-19 98.2 114 51.8
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 7.2e-19 97.4 114 55.3
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 9.4e-19 97.1 105 53.3
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 9.4e-19 97.1 109 54.1
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 9.4e-19 97.1 109 54.1
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.2e-18 96.7 116 49.1
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 1.6e-18 96.3 108 52.8
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 2.7e-18 95.5 98 53.1
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 3.6e-18 95.1 115 48.7
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 4.7e-18 94.7 104 50.0
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 6.1e-18 94.4 116 51.7
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 8.0e-18 94.0 108 51.9
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 8.0e-18 94.0 100 51.0
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.0e-18 94.0 109 49.5
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 8.0e-18 94.0 109 49.5
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 8.0e-18 94.0 109 52.3
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 1.0e-17 93.6 100 52.0
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 1.0e-17 93.6 116 50.0
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 1.0e-17 93.6 102 53.9
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 2.3e-17 92.4 103 51.5
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.3e-17 92.4 110 51.8
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 4.0e-17 91.7 116 48.3
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 5.2e-17 91.3 106 50.9
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 5.2e-17 91.3 119 46.2
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 5.2e-17 91.3 117 48.7
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 8.8e-17 90.5 93 50.5
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 8.8e-17 90.5 94 54.3
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 1.2e-16 90.1 101 50.5
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.2e-16 90.1 110 51.8
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 1.2e-16 90.1 119 45.4
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.5e-16 89.7 109 48.6
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 1.5e-16 89.7 112 50.0
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 2.0e-16 89.4 109 55.0
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 2.0e-16 89.4 120 48.3
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.6e-16 89.0 98 45.9
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 2.6e-16 89.0 94 54.3
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.3e-16 88.6 107 50.5
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 3.3e-16 88.6 106 50.9
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 4.4e-16 88.2 96 49.0
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 4.4e-16 88.2 120 48.3
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.7e-16 87.8 100 47.0
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 5.7e-16 87.8 102 52.0
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 7.5e-16 87.4 116 46.6
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 7.5e-16 87.4 100 47.0
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 7.5e-16 87.4 94 45.7
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 7.5e-16 87.4 113 47.8
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 7.5e-16 87.4 94 50.0
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 7.5e-16 87.4 118 47.5
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.3e-15 86.7 100 49.0
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 1.7e-15 86.3 85 56.5
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.7e-15 86.3 107 50.5
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 2.2e-15 85.9 101 51.5
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.8e-15 85.5 100 48.0
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 3.7e-15 85.1 94 50.0
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 6.3e-15 84.3 89 48.3
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 8.2e-15 84.0 112 44.6
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 1.1e-14 83.6 101 49.5
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.4e-14 83.2 95 51.6
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 1.8e-14 82.8 94 48.9
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 1.8e-14 82.8 111 44.1
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.8e-14 82.8 93 51.6
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.4e-14 82.4 109 48.6
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 3.1e-14 82.0 116 43.1
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 4.1e-14 81.6 94 47.9
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 4.1e-14 81.6 102 48.0
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 7.0e-14 80.9 117 41.9
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 9.1e-14 80.5 94 45.7
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 1.2e-13 80.1 94 47.9
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 2.0e-13 79.3 103 41.7
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.0e-13 79.3 103 42.7
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.0e-13 79.3 109 45.9
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 2.7e-13 79.0 103 42.7
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 2.7e-13 79.0 120 42.5
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.7e-13 79.0 104 50.0
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 4.5e-13 78.2 104 44.2
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 4.5e-13 78.2 104 44.2
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 4.5e-13 78.2 104 44.2
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 5.9e-13 77.8 92 50.0
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 7.7e-13 77.4 103 41.7
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 1.0e-12 77.0 99 48.5
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.0e-12 77.0 103 41.7
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.3e-12 76.6 86 52.3
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 1.3e-12 76.6 104 47.1
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.3e-12 76.6 83 50.6
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.3e-12 76.6 100 51.0
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.2e-12 75.9 102 42.2
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 2.2e-12 75.9 86 53.5
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 2.9e-12 75.5 86 48.8
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 2.9e-12 75.5 97 47.4
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 2.9e-12 75.5 85 49.4
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 2.9e-12 75.5 103 48.5
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 3.8e-12 75.1 97 47.4
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 3.8e-12 75.1 90 50.0
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 5.0e-12 74.7 97 48.5
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 5.0e-12 74.7 97 46.4
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 5.0e-12 74.7 89 48.3
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 6.5e-12 74.3 93 48.4
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 8.5e-12 73.9 93 48.4
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 1.5e-11 73.2 97 48.5
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 1.5e-11 73.2 97 48.5
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 1.5e-11 73.2 98 41.8
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.5e-11 73.2 97 46.4
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.5e-11 73.2 91 49.5
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 1.9e-11 72.8 93 48.4
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 1.9e-11 72.8 106 40.6
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 2.5e-11 72.4 86 51.2
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 2.5e-11 72.4 86 51.2
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 2.5e-11 72.4 91 41.8
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.5e-11 72.4 88 45.5
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.5e-11 72.4 89 47.2
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 3.2e-11 72.0 95 50.5
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.2e-11 72.0 97 49.5
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 4.2e-11 71.6 104 44.2
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 4.2e-11 71.6 102 46.1
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 4.2e-11 71.6 93 48.4
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 5.5e-11 71.2 95 50.5
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 7.2e-11 70.9 97 45.4
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 7.2e-11 70.9 108 43.5
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.2e-10 70.1 102 47.1
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 1.2e-10 70.1 96 47.9
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.2e-10 70.1 93 43.0
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.2e-10 70.1 92 47.8
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.6e-10 69.7 104 43.3
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 1.6e-10 69.7 93 48.4
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.6e-10 69.7 108 48.1
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 2.1e-10 69.3 117 40.2
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 2.1e-10 69.3 91 40.7
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.7e-10 68.9 97 45.4
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 3.6e-10 68.6 101 40.6
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 4.7e-10 68.2 91 42.9
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.1e-10 67.8 101 40.6
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 1.0e-09 67.0 88 47.7
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 1.0e-09 67.0 88 47.7
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 1.0e-09 67.0 104 43.3
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.8e-09 66.2 89 47.2
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 2.3e-09 65.9 104 40.4
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 2.3e-09 65.9 82 45.1
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 4.0e-09 65.1 90 43.3
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 5.2e-09 64.7 93 45.2
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 5.2e-09 64.7 121 38.8
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 5.2e-09 64.7 121 38.8
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 6.8e-09 64.3 104 43.3
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 6.8e-09 64.3 106 44.3
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.2e-08 63.5 89 43.8
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.5e-08 63.2 94 45.7
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.5e-08 63.2 99 40.4
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 2.0e-08 62.8 103 43.7
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 3.4e-08 62.0 101 44.6
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 4.4e-08 61.6 104 36.5
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 5.7e-08 61.2 93 43.0
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 5.7e-08 61.2 104 40.4
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 9.8e-08 60.5 89 44.9
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 3.7e-07 58.5 90 37.8
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 4.8e-07 58.2 82 46.3
PGSC0003DMG400013448 Solanum tuberosum HOM05D003940 ORTHO05D004461 8.3e-07 57.4 49 63.3
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 1.1e-06 57.0 120 36.7
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 2.4e-06 55.8 86 40.7


User provided reference genes

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