Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 6.6e-73 277.3 146 100.0
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 1.4e-70 269.6 146 97.3
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 1.4e-62 243.0 143 87.4
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 4.9e-60 234.6 147 84.4
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 4.9e-60 234.6 147 84.4
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 8.4e-60 233.8 147 83.7
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 1.4e-59 233.0 141 84.4
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 5.4e-59 231.1 144 84.0
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 2.1e-58 229.2 144 82.6
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 6.0e-58 227.6 143 80.4
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.8e-57 226.1 144 80.6
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 2.3e-57 225.7 147 81.6
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 3.0e-57 225.3 144 80.6
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 8.7e-57 223.8 146 81.5
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 1.5e-56 223.0 142 80.3
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 1.9e-56 222.6 144 79.9
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 1.9e-56 222.6 145 82.8
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 2.5e-56 222.2 143 79.0
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 2.5e-56 222.2 145 82.1
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 4.3e-56 221.5 145 82.1
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 4.3e-56 221.5 148 81.8
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 5.6e-56 221.1 142 82.4
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 5.6e-56 221.1 142 82.4
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 9.6e-56 220.3 148 79.7
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 1.3e-55 219.9 138 83.3
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 1.6e-55 219.5 142 80.3
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.6e-55 219.5 146 80.1
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.6e-55 219.5 146 80.1
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 1.6e-55 219.5 146 80.1
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 2.8e-55 218.8 139 79.9
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 2.8e-55 218.8 142 81.0
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 4.8e-55 218.0 145 81.4
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 4.8e-55 218.0 147 78.2
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 6.2e-55 217.6 139 80.6
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 6.2e-55 217.6 138 81.9
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 6.2e-55 217.6 147 78.2
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 8.1e-55 217.2 147 77.6
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 8.1e-55 217.2 139 79.9
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 8.1e-55 217.2 140 80.0
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 8.1e-55 217.2 138 81.9
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 1.8e-54 216.1 149 77.2
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 1.8e-54 216.1 149 77.2
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 2.4e-54 215.7 139 80.6
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 2.4e-54 215.7 138 79.0
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 3.1e-54 215.3 139 79.1
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 3.1e-54 215.3 147 77.6
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 3.1e-54 215.3 138 80.4
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 4.0e-54 214.9 143 77.6
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 4.0e-54 214.9 147 75.5
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 4.0e-54 214.9 141 81.6
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 4.0e-54 214.9 147 78.9
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 4.0e-54 214.9 148 77.7
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 6.9e-54 214.2 149 76.5
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 6.9e-54 214.2 143 77.6
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 6.9e-54 214.2 143 77.6
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 9.0e-54 213.8 140 81.4
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 9.0e-54 213.8 138 79.7
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 9.0e-54 213.8 142 76.8
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 1.2e-53 213.4 137 78.1
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 1.2e-53 213.4 142 78.2
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.2e-53 213.4 148 75.7
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.5e-53 213.0 144 77.8
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.5e-53 213.0 144 77.8
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 1.5e-53 213.0 146 76.0
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 2.0e-53 212.6 142 79.6
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 2.6e-53 212.2 147 76.2
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 2.6e-53 212.2 142 78.2
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 2.6e-53 212.2 146 76.0
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 3.4e-53 211.8 145 77.9
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 3.4e-53 211.8 140 79.3
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 4.5e-53 211.5 138 79.7
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 5.8e-53 211.1 148 76.4
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 7.6e-53 210.7 143 76.2
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 1.3e-52 209.9 141 77.3
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.7e-52 209.5 143 76.2
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 2.2e-52 209.1 146 76.7
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 2.2e-52 209.1 139 76.3
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 2.2e-52 209.1 143 76.2
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 2.2e-52 209.1 133 81.2
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.9e-52 208.8 143 76.2
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 2.9e-52 208.8 136 80.1
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 4.9e-52 208.0 140 80.0
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 6.4e-52 207.6 139 76.3
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 8.4e-52 207.2 148 75.7
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 1.1e-51 206.8 143 75.5
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.1e-51 206.8 143 75.5
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 1.1e-51 206.8 141 77.3
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.4e-51 206.5 148 75.0
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 5.5e-51 204.5 137 77.4
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 7.1e-51 204.1 142 76.1
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 9.3e-51 203.8 144 75.7
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 9.3e-51 203.8 142 76.1
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 1.2e-50 203.4 137 76.6
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 1.6e-50 203.0 137 76.6
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 2.1e-50 202.6 148 75.0
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.0e-49 200.3 139 74.8
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 1.3e-49 199.9 123 82.9
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 1.8e-49 199.5 142 74.6
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 3.0e-49 198.7 137 75.9
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 5.1e-49 198.0 139 73.4
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 6.7e-49 197.6 137 74.5
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.1e-48 196.8 140 72.9
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 5.6e-48 194.5 139 70.5
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 6.2e-47 191.0 141 68.8
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 8.2e-47 190.7 137 69.3
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.8e-46 189.5 143 67.8
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 2.4e-46 189.1 138 69.6
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 6.9e-46 187.6 138 68.8
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 6.9e-46 187.6 138 68.8
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 9.0e-46 187.2 143 67.8
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 1.5e-45 186.4 141 66.7
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 2.0e-45 186.0 136 71.3
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 4.5e-45 184.9 139 66.9
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 5.8e-45 184.5 142 65.5
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 7.6e-45 184.1 137 67.2
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 7.6e-45 184.1 136 69.1
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 7.6e-45 184.1 140 66.4
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 2.2e-44 182.6 118 81.4
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 8.4e-44 180.6 138 68.1
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 8.4e-44 180.6 138 68.1
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 8.4e-44 180.6 138 68.1
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 1.9e-43 179.5 137 67.2
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 2.5e-43 179.1 143 65.7
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 9.3e-43 177.2 133 67.7
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 1.2e-42 176.8 142 64.8
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 1.6e-42 176.4 142 64.8
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 1.8e-41 172.9 114 79.8
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 2.5e-40 169.1 137 62.0
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 4.3e-40 168.3 142 64.1
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 4.3e-40 168.3 142 64.1
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 7.4e-40 167.5 135 64.4
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 1.6e-39 166.4 146 64.4
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 5.3e-38 161.4 142 58.5
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 2.0e-37 159.5 138 59.4
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 8.5e-36 154.1 145 58.6
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 4.3e-32 141.7 129 58.1
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 4.1e-30 135.2 107 59.8
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 2.6e-29 132.5 131 56.5
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 5.9e-29 131.3 130 56.2
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 5.7e-24 114.8 108 62.0
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 5.9e-21 104.8 84 63.1
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 1.7e-20 103.2 80 67.5
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 1.1e-19 100.5 136 41.2
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 2.1e-18 96.3 138 40.6
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 2.0e-13 79.7 86 48.8
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 7.7e-13 77.8 48 79.2


User provided reference genes

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