Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 2.4e-145 518.8 271 100.0
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 5.5e-81 305.1 163 99.4
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 1.7e-37 160.6 149 56.4
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 7.0e-36 155.2 158 51.3
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 9.2e-36 154.8 148 56.1
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 2.7e-35 153.3 153 55.6
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 3.9e-34 149.4 152 53.3
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 8.6e-34 148.3 148 54.1
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 2.5e-33 146.7 158 54.4
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 4.3e-33 146.0 156 54.5
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 5.6e-33 145.6 152 52.0
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 7.3e-33 145.2 160 49.4
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 2.8e-32 143.3 149 53.0
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 4.7e-32 142.5 160 47.5
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.0e-31 139.4 153 47.1
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 4.0e-31 139.4 148 51.4
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 5.2e-31 139.0 154 50.6
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 1.2e-30 137.9 156 50.0
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 3.4e-30 136.3 154 45.5
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 7.5e-30 135.2 155 50.3
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 7.5e-30 135.2 155 50.3
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 1.3e-29 134.4 148 52.0
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 1.3e-29 134.4 163 46.6
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 1.3e-29 134.4 158 47.5
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 1.7e-29 134.0 118 53.4
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 1.7e-29 134.0 149 51.0
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 2.2e-29 133.7 149 50.3
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.7e-29 132.9 154 49.4
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 3.7e-29 132.9 149 48.3
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 4.9e-29 132.5 157 47.8
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 4.9e-29 132.5 154 49.4
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 4.9e-29 132.5 149 50.3
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 6.4e-29 132.1 149 48.3
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 8.3e-29 131.7 154 49.4
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.4e-28 131.0 157 49.0
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 4.1e-28 129.4 155 47.1
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 5.4e-28 129.0 131 51.1
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 5.4e-28 129.0 150 48.7
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 9.2e-28 128.3 158 47.5
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.6e-27 127.5 151 46.4
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 3.5e-27 126.3 151 45.0
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 6.0e-27 125.6 160 42.5
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 7.8e-27 125.2 161 47.2
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 7.8e-27 125.2 142 49.3
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 1.0e-26 124.8 150 47.3
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.3e-26 124.4 153 46.4
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 1.7e-26 124.0 162 46.9
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 1.7e-26 124.0 149 49.7
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 8.6e-26 121.7 148 47.3
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 2.5e-25 120.2 150 48.0
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 9.5e-25 118.2 147 46.3
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 1.6e-24 117.5 146 47.3
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 2.1e-24 117.1 160 46.2
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 2.1e-24 117.1 147 46.3
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.8e-24 116.7 160 44.4
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.8e-24 116.7 160 44.4
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 2.8e-24 116.7 146 45.9
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 2.8e-24 116.7 149 45.6
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 8.1e-24 115.2 152 44.7
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 1.1e-23 114.8 177 39.5
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 1.1e-23 114.8 147 45.6
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 1.4e-23 114.4 147 47.6
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 1.8e-23 114.0 149 45.0
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 2.4e-23 113.6 117 47.9
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 3.1e-23 113.2 117 47.0
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.1e-23 113.2 148 45.9
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 4.0e-23 112.8 162 43.2
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 5.2e-23 112.5 149 45.0
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 1.2e-22 111.3 150 44.0
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 1.5e-22 110.9 120 46.7
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 3.4e-22 109.8 150 41.3
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 4.4e-22 109.4 156 43.6
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 5.8e-22 109.0 161 43.5
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 7.6e-22 108.6 148 44.6
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.3e-21 107.8 162 39.5
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.3e-21 107.8 166 41.6
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 3.8e-21 106.3 149 43.0
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 4.9e-21 105.9 117 45.3
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 4.9e-21 105.9 117 48.7
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 2.4e-20 103.6 139 43.9
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 9.2e-20 101.7 155 39.4
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 9.2e-20 101.7 111 46.8
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 9.2e-20 101.7 122 41.0
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.6e-19 100.9 161 41.6
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 2.7e-19 100.1 111 46.8
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 2.7e-19 100.1 151 41.7
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 6.0e-19 99.0 114 43.0
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.0e-19 99.0 120 44.2
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 7.8e-19 98.6 154 40.3
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.0e-18 98.2 150 38.7
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 1.3e-18 97.8 161 40.4
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 1.7e-18 97.4 111 45.9
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 2.3e-18 97.1 142 42.3
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 6.6e-18 95.5 151 41.1
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 8.7e-18 95.1 149 43.6
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 8.7e-18 95.1 155 39.4
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.5e-17 93.6 158 38.6
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.5e-17 93.6 131 40.5
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 3.3e-17 93.2 152 40.1
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.3e-17 93.2 213 33.3
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 5.6e-17 92.4 153 38.6
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 9.6e-17 91.7 119 48.7
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 1.2e-16 91.3 159 36.5
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 2.1e-16 90.5 157 38.9
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 3.6e-16 89.7 143 40.6
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 4.7e-16 89.4 150 40.7
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 8.1e-16 88.6 106 50.0
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 1.1e-15 88.2 150 37.3
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 1.1e-15 88.2 100 51.0
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 1.4e-15 87.8 100 50.0
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 2.4e-15 87.0 154 39.6
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 2.4e-15 87.0 100 50.0
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 2.4e-15 87.0 158 38.0
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 3.1e-15 86.7 100 50.0
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 3.1e-15 86.7 100 50.0
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 3.1e-15 86.7 100 50.0
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 3.1e-15 86.7 100 50.0
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 1.5e-14 84.3 109 41.3
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.0e-14 84.0 157 38.2
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 2.0e-14 84.0 100 49.0
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 2.0e-14 84.0 100 49.0
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.6e-14 83.6 157 35.0
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 2.6e-14 83.6 116 39.7
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 3.4e-14 83.2 145 37.2
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 4.4e-14 82.8 140 40.0
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 4.4e-14 82.8 100 49.0
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 5.8e-14 82.4 100 50.0
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 9.9e-14 81.6 100 48.0
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 1.3e-13 81.3 175 38.3
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.2e-13 80.5 146 39.7
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 2.2e-13 80.5 156 35.9
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 4.9e-13 79.3 153 38.6
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 6.4e-13 79.0 164 36.6
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.4e-13 79.0 145 36.6
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 8.4e-13 78.6 165 37.0
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 8.4e-13 78.6 99 41.4
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 1.1e-12 78.2 151 34.4
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 1.1e-12 78.2 151 34.4
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.9e-12 77.4 158 32.9
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 1.9e-12 77.4 116 40.5
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.4e-12 77.0 158 32.9
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.2e-12 76.6 151 37.1
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 4.2e-12 76.3 116 41.4
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 7.1e-12 75.5 160 33.8
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.1e-12 75.5 151 36.4
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 1.6e-11 74.3 150 34.0
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 4.6e-11 72.8 146 37.7
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 4.6e-11 72.8 122 41.8
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 4.6e-11 72.8 117 38.5
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 6.0e-11 72.4 123 39.0
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 1.7e-10 70.9 167 35.3
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 3.0e-10 70.1 154 32.5
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 5.1e-10 69.3 151 33.1
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 5.1e-10 69.3 118 38.1
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 6.6e-10 68.9 94 44.7
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 6.6e-10 68.9 94 44.7
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 6.6e-10 68.9 118 38.1
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 1.5e-09 67.8 157 33.8
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 3.3e-09 66.6 176 33.5
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.3e-09 66.6 153 34.0
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 4.3e-09 66.2 135 37.8
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 4.3e-09 66.2 131 36.6
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.3e-09 65.5 152 34.2
QL06p009884 Quercus lobata HOM05D003565 ORTHO05D003943 7.3e-09 65.5 122 31.1
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 9.6e-09 65.1 151 31.8
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 9.6e-09 65.1 171 33.9
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 9.6e-09 65.1 158 35.4
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 1.6e-08 64.3 171 32.7
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 8.1e-08 62.0 168 33.3
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.1e-07 61.6 96 36.5
CsaV3_3G014760 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.4e-07 61.2 131 32.1
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 1.4e-07 61.2 143 32.9
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 3.1e-07 60.1 119 35.3
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.0e-07 59.7 117 39.3
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 1.5e-06 57.8 103 37.9
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.5e-06 57.8 180 28.9
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 3.4e-06 56.6 177 32.2
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 3.4e-06 56.6 177 32.2
QL06p009948 Quercus lobata HOM05D003565 ORTHO05D003943 3.4e-06 56.6 119 28.6
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 5.8e-06 55.8 157 32.5
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 7.6e-06 55.5 178 33.1


User provided reference genes

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