Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 1.3e-70 269.6 134 100.0
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 5.6e-18 94.7 141 43.3
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 7.3e-18 94.4 140 42.9
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 9.5e-18 94.0 142 42.3
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 2.1e-17 92.8 141 43.3
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 2.8e-17 92.4 136 44.1
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 6.2e-17 91.3 119 48.7
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 6.2e-17 91.3 119 48.7
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 1.8e-16 89.7 140 40.7
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 3.1e-16 89.0 144 41.7
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 2.6e-15 85.9 137 43.8
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 7.6e-15 84.3 134 44.8
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 7.6e-15 84.3 119 43.7
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 1.3e-14 83.6 127 40.2
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.9e-14 82.4 121 42.1
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 3.7e-14 82.0 119 42.9
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 3.7e-14 82.0 117 42.7
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 3.7e-14 82.0 136 42.6
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 6.4e-14 81.3 134 42.5
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 8.4e-14 80.9 100 49.0
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 1.1e-13 80.5 99 48.5
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.9e-13 79.7 135 45.2
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 1.9e-13 79.7 118 45.8
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 4.1e-13 78.6 142 39.4
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 5.4e-13 78.2 142 40.8
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 9.2e-13 77.4 125 40.0
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 9.2e-13 77.4 142 38.0
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.6e-12 76.6 140 40.0
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 1.6e-12 76.6 122 41.8
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 1.6e-12 76.6 142 38.0
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 3.5e-12 75.5 118 45.8
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 6.0e-12 74.7 117 41.0
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 6.0e-12 74.7 98 44.9
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 7.8e-12 74.3 119 41.2
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.3e-11 73.6 116 40.5
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 1.3e-11 73.6 122 36.9
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 1.7e-11 73.2 119 40.3
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 3.9e-11 72.0 98 44.9
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 3.9e-11 72.0 120 41.7
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 3.9e-11 72.0 144 36.8
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 5.1e-11 71.6 99 43.4
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 8.6e-11 70.9 120 37.5
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 8.6e-11 70.9 115 42.6
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 8.6e-11 70.9 124 40.3
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 8.6e-11 70.9 141 37.6
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.5e-10 70.1 116 44.0
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 1.5e-10 70.1 123 38.2
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 1.9e-10 69.7 104 45.2
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 2.5e-10 69.3 141 36.9
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 3.3e-10 68.9 116 43.1
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.3e-10 68.9 116 43.1
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 4.3e-10 68.6 119 41.2
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 5.6e-10 68.2 115 40.0
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 5.6e-10 68.2 120 39.2
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 7.3e-10 67.8 116 37.9
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 7.3e-10 67.8 130 36.2
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 9.6e-10 67.4 115 38.3
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 9.6e-10 67.4 141 39.7
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.2e-09 67.0 120 40.0
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.2e-09 67.0 120 39.2
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.2e-09 67.0 120 39.2
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 1.2e-09 67.0 104 44.2
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 1.2e-09 67.0 143 35.0
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 1.6e-09 66.6 141 34.8
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 1.6e-09 66.6 121 35.5
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 1.6e-09 66.6 114 38.6
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 1.6e-09 66.6 98 42.9
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 2.1e-09 66.2 140 35.7
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 2.8e-09 65.9 98 42.9
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 3.6e-09 65.5 121 35.5
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 3.6e-09 65.5 113 37.2
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 3.6e-09 65.5 119 37.8
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 4.7e-09 65.1 104 40.4
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 4.7e-09 65.1 125 37.6
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 4.7e-09 65.1 122 40.2
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 6.2e-09 64.7 104 40.4
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 6.2e-09 64.7 138 37.7
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 6.2e-09 64.7 119 38.7
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 8.1e-09 64.3 116 40.5
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 8.1e-09 64.3 117 40.2
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.1e-08 63.9 121 36.4
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.4e-08 63.5 99 39.4
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.4e-08 63.5 121 36.4
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.4e-08 63.5 121 37.2
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.8e-08 63.2 131 35.1
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 1.8e-08 63.2 105 41.9
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 2.4e-08 62.8 116 40.5
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.4e-08 62.8 119 37.8
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 2.4e-08 62.8 104 39.4
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.0e-08 62.0 124 39.5
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 5.2e-08 61.6 119 34.5
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 5.2e-08 61.6 119 34.5
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 6.8e-08 61.2 150 35.3
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 8.9e-08 60.8 106 40.6
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 1.2e-07 60.5 140 32.9
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 1.5e-07 60.1 119 36.1
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.5e-07 60.1 116 37.9
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 2.0e-07 59.7 102 40.2
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 2.0e-07 59.7 120 39.2
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 2.0e-07 59.7 105 42.9
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 2.6e-07 59.3 119 40.3
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 2.6e-07 59.3 108 39.8
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 3.4e-07 58.9 131 35.1
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.4e-07 58.9 117 36.8
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 5.8e-07 58.2 102 40.2
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 5.8e-07 58.2 108 39.8
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 5.8e-07 58.2 108 39.8
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 7.6e-07 57.8 108 39.8
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 7.6e-07 57.8 108 39.8
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 9.9e-07 57.4 101 41.6
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 9.9e-07 57.4 124 33.1
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 1.3e-06 57.0 121 32.2
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 1.3e-06 57.0 135 31.9
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 1.3e-06 57.0 144 36.1
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 1.3e-06 57.0 108 40.7
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 1.3e-06 57.0 108 40.7
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 1.3e-06 57.0 108 39.8
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.2e-06 56.2 95 40.0
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 2.2e-06 56.2 108 39.8
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.9e-06 55.8 114 36.0
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 2.9e-06 55.8 112 37.5
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 3.8e-06 55.5 121 35.5
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 3.8e-06 55.5 107 36.4
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 4.9e-06 55.1 102 39.2
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 4.9e-06 55.1 100 38.0
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.4e-06 54.7 117 35.9
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 6.4e-06 54.7 121 36.4
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 8.4e-06 54.3 117 35.9
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 8.4e-06 54.3 107 39.3
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 8.4e-06 54.3 117 33.3


User provided reference genes

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