Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 0.0e+00 2322.0 1207 100.0
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 2.9e-259 899.4 1199 45.6
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 6.6e-259 898.3 1187 45.8
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 1.2e-244 850.9 1177 44.5
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 5.1e-235 818.9 1194 42.9
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 1.3e-227 794.3 1179 41.7
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 2.8e-225 786.6 1199 42.1
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 9.3e-221 771.5 1176 41.2
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 1.7e-219 767.3 1209 40.5
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 3.6e-217 759.6 1191 40.7
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 1.1e-216 758.1 1195 40.1
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 1.5e-215 754.2 1195 39.7
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 2.9e-214 750.0 1190 40.6
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 3.9e-211 739.6 1186 39.8
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 3.8e-206 723.0 1196 38.7
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 6.4e-206 722.2 1188 38.7
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 9.3e-205 718.4 1167 38.4
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 2.7e-204 716.8 1192 38.6
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 5.1e-203 712.6 1183 39.4
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 7.4e-202 708.8 1180 37.5
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 1.1e-197 694.9 1155 37.2
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 7.1e-197 692.2 1189 36.4
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 3.5e-196 689.9 1162 38.0
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 8.7e-195 685.3 1176 38.9
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 1.5e-194 684.5 1183 37.4
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 1.5e-194 684.5 1183 37.4
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 9.6e-194 681.8 1183 36.9
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 3.7e-193 679.9 1189 38.8
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 3.4e-191 673.3 1153 38.2
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 3.4e-191 673.3 1188 37.2
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.0e-190 671.8 1220 36.4
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 1.0e-190 671.8 1193 38.1
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 5.0e-190 669.5 1168 37.1
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 2.1e-188 664.1 1173 37.2
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 3.5e-188 663.3 1178 37.6
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 6.1e-188 662.5 1171 37.3
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 1.0e-187 661.8 1214 36.6
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 4.8e-185 652.9 1158 37.9
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 1.4e-184 651.4 1177 35.6
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 7.9e-180 635.6 1185 36.0
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 1.4e-176 624.8 1188 35.5
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 5.9e-175 619.4 1156 37.0
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 3.8e-174 616.7 1175 36.1
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 7.2e-173 612.5 1015 39.2
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.1e-172 610.9 1198 34.9
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 2.1e-172 610.9 1182 35.5
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 3.6e-172 610.1 1188 35.9
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 1.0e-171 608.6 1168 34.8
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 1.4e-171 608.2 1131 36.4
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.0e-170 604.4 1193 35.0
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 2.0e-170 604.4 1253 34.5
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 1.7e-169 601.3 1172 35.3
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 1.7e-169 601.3 1181 34.7
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 1.8e-168 597.8 1131 37.5
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 1.8e-168 597.8 1179 35.9
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 2.4e-168 597.4 1183 35.1
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 4.1e-168 596.7 1170 35.6
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 2.0e-167 594.3 1167 36.5
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 1.0e-166 592.0 1183 35.2
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 1.2e-164 585.1 1016 39.5
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 1.1e-162 578.6 1184 34.0
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 4.4e-162 576.6 1164 34.8
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 4.4e-162 576.6 1117 35.4
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 1.4e-160 571.6 1179 34.6
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.3e-158 565.1 1183 33.9
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 2.9e-158 563.9 1170 33.8
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 3.8e-158 563.5 1176 34.3
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 8.5e-158 562.4 1164 34.7
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 3.6e-156 557.0 1183 34.1
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 8.0e-156 555.8 1148 36.1
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 1.8e-152 544.7 1164 34.2
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 7.0e-152 542.7 1160 33.4
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 2.0e-151 541.2 1173 33.4
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 2.0e-151 541.2 1167 33.4
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 4.5e-151 540.0 1176 33.5
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 2.2e-150 537.7 1161 33.4
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 6.1e-148 529.6 1160 33.2
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 1.7e-145 521.5 1174 33.4
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 2.0e-143 514.6 1163 32.3
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 7.7e-143 512.7 975 35.9
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 1.0e-142 512.3 1176 31.9
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 2.3e-142 511.1 1171 32.4
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 1.6e-140 505.0 1211 33.0
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 1.4e-139 501.9 1069 35.5
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 4.0e-139 500.4 1198 31.1
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 7.5e-138 496.1 1169 32.6
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 2.7e-135 487.6 939 36.3
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 1.7e-134 485.0 1161 31.9
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 3.3e-133 480.7 654 43.1
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 9.5e-133 479.2 939 34.9
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 6.8e-123 446.4 994 32.4
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 5.6e-117 426.8 918 33.2
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 7.3e-117 426.4 1245 28.6
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 9.9e-114 416.0 980 31.2
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 1.5e-93 349.0 1227 25.9
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 3.4e-90 337.8 896 30.8
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 3.2e-88 331.3 423 43.0
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 1.6e-87 328.9 394 46.4
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 1.9e-77 295.4 1262 25.5
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 1.8e-75 288.9 1291 24.5
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 6.1e-71 273.9 298 50.3
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 2.8e-68 265.0 300 50.7
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.8e-67 262.3 299 49.5
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 1.8e-67 262.3 299 49.5
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 1.5e-66 259.2 299 49.2
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 2.6e-66 258.5 300 49.3
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 1.3e-65 256.1 813 27.8
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 1.1e-61 243.0 266 47.7
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 3.2e-56 224.9 235 52.3
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 2.7e-55 221.9 307 43.0
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 1.8e-54 219.2 1135 24.0
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 1.8e-54 219.2 307 42.7
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 8.8e-54 216.9 300 45.0
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.7e-49 202.6 235 46.8
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 5.0e-49 201.1 291 40.9
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.0e-46 193.4 418 32.1
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 3.3e-45 188.3 354 34.2
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 5.9e-42 177.6 838 23.9
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 2.2e-41 175.6 175 51.4
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 1.4e-38 166.4 190 46.8
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 3.4e-37 161.8 175 49.1
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 1.3e-36 159.8 175 52.0
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 3.1e-35 155.2 169 50.9
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 5.9e-34 151.0 187 42.8
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 3.6e-31 141.7 167 48.5
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 5.2e-30 137.9 128 56.2
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 4.9e-28 131.3 409 27.1
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 5.4e-27 127.9 498 26.7
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 1.8e-22 112.8 227 33.0
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.7e-20 106.3 308 28.2
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 8.3e-20 104.0 243 29.6
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 5.4e-19 101.3 108 50.0
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 5.6e-16 91.3 429 26.6
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.4e-14 86.7 103 43.7
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 5.8e-13 81.3 104 42.3
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 3.7e-12 78.6 210 28.1
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 4.3e-08 65.1 79 39.2
DCAR_027198 Daucus carota HOM05D000007 ORTHO05D000039 4.3e-08 65.1 110 39.1
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 5.6e-08 64.7 78 39.7
DCAR_027197 Daucus carota HOM05D000007 ORTHO05D000039 1.2e-07 63.5 106 36.8
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.8e-07 62.4 85 42.4
SHI28140 Sapria himalayana HOM05D004959 ORTHO05D005961 3.6e-07 62.0 74 47.3
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 1.1e-06 60.5 52 51.9
DCAR_027205 Daucus carota HOM05D000007 ORTHO05D000039 1.4e-06 60.1 63 47.6
DCAR_027199 Daucus carota HOM05D000007 ORTHO05D000039 4.0e-06 58.5 48 58.3
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 8.9e-06 57.4 40 65.0
DCAR_027202 Daucus carota HOM05D000007 ORTHO05D000039 8.9e-06 57.4 108 33.3


User provided reference genes

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