Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 1.9e-201 705.7 377 100.0
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 6.4e-128 461.5 374 63.6
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 4.3e-124 448.7 374 61.2
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 1.3e-120 437.2 375 59.7
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 3.5e-118 429.1 373 58.7
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 3.0e-117 426.0 377 59.2
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 1.4e-114 417.2 374 57.8
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 6.9e-114 414.8 376 55.9
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 9.0e-114 414.5 375 54.7
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 2.9e-112 409.5 372 57.3
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 4.9e-112 408.7 370 60.0
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 6.4e-112 408.3 374 56.7
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 1.4e-111 407.1 374 57.2
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 9.3e-111 404.4 374 56.1
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 9.3e-111 404.4 378 56.9
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 9.3e-111 404.4 378 57.4
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 9.3e-111 404.4 374 57.0
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 6.0e-110 401.7 373 56.0
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 7.9e-110 401.4 370 55.1
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 1.0e-109 401.0 370 55.4
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 3.9e-109 399.1 370 54.3
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 1.9e-108 396.7 373 56.8
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 2.5e-108 396.4 391 58.8
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 4.3e-108 395.6 371 54.7
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 5.6e-108 395.2 373 51.5
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 9.6e-108 394.4 373 52.0
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 1.3e-107 394.0 374 55.9
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.6e-107 393.7 377 56.5
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 2.8e-107 392.9 373 51.2
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 3.6e-107 392.5 373 51.7
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 4.0e-106 389.0 325 60.6
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 6.9e-106 388.3 375 56.5
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 9.0e-106 387.9 375 55.7
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 9.0e-106 387.9 373 53.4
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 7.6e-105 384.8 376 54.8
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 1.3e-104 384.0 374 55.1
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 2.9e-104 382.9 369 54.2
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 1.4e-103 380.6 371 55.0
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 7.1e-103 378.3 377 56.2
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 7.1e-103 378.3 373 55.5
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 3.5e-102 375.9 371 55.0
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 6.0e-102 375.2 347 56.5
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 2.3e-101 373.2 375 54.7
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 3.9e-101 372.5 372 55.1
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 5.1e-101 372.1 344 58.4
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 6.7e-101 371.7 372 53.0
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 8.7e-101 371.3 372 54.8
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 1.9e-100 370.2 370 54.1
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 1.9e-100 370.2 370 54.1
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 1.9e-100 370.2 373 52.5
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 2.5e-100 369.8 371 54.2
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 3.3e-100 369.4 372 55.4
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 5.6e-100 368.6 376 53.7
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 9.6e-100 367.9 447 43.8
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 1.3e-99 367.5 373 53.9
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 2.8e-99 366.3 374 50.8
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 3.7e-99 365.9 361 56.2
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 6.2e-99 365.2 372 54.3
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 6.2e-99 365.2 376 52.4
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 8.1e-99 364.8 377 52.0
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 8.1e-99 364.8 373 53.6
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 3.1e-98 362.8 369 50.7
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 3.1e-98 362.8 373 50.9
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 5.3e-98 362.1 379 54.4
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 6.9e-98 361.7 373 53.4
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 2.0e-97 360.1 367 50.4
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 2.6e-97 359.8 374 51.6
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 3.4e-97 359.4 369 49.9
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 5.8e-97 358.6 371 51.2
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 1.3e-96 357.5 413 47.2
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 2.9e-96 356.3 376 51.1
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 6.5e-96 355.1 373 51.7
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 1.9e-95 353.6 374 49.5
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 1.9e-95 353.6 374 48.9
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 3.9e-93 345.9 377 51.2
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 6.7e-93 345.1 384 51.0
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 1.6e-91 340.5 369 50.7
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 3.1e-90 336.3 366 48.4
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 6.1e-86 322.0 377 48.0
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 3.0e-85 319.7 374 45.2
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 2.8e-83 313.2 386 44.0
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 1.1e-79 301.2 294 49.7
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 7.2e-79 298.5 366 44.3
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 3.9e-77 292.7 382 44.8
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 8.8e-77 291.6 331 49.2
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 5.3e-74 282.3 240 61.7
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 2.6e-73 280.0 290 54.1
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 3.2e-71 273.1 160 78.1
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 1.6e-70 270.8 320 47.8
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 2.1e-70 270.4 392 42.6
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 6.7e-69 265.4 310 48.7
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 1.1e-68 264.6 373 40.5
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 2.6e-68 263.5 311 47.9
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 5.5e-63 245.7 375 39.2
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 3.6e-62 243.0 316 45.6
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.8e-61 240.7 181 60.2
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 1.9e-55 220.7 142 71.8
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 8.8e-53 211.8 126 75.4
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 8.3e-51 205.3 265 42.6
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 5.9e-49 199.1 250 45.2
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 1.2e-46 191.4 109 82.6
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 6.3e-43 179.1 265 44.2
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.1e-42 178.3 150 56.0
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 3.1e-42 176.8 102 72.5
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 5.4e-42 176.0 112 71.4
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 9.2e-42 175.3 134 56.0
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 2.0e-41 174.1 266 40.2
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 1.0e-40 171.8 261 41.0
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 2.9e-40 170.2 192 44.3
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 6.6e-40 169.1 281 35.2
Migut.O00731 Erythranthe guttata HOM05D005922 ORTHO05D006934 1.9e-39 167.5 229 43.2
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 8.0e-38 162.2 96 77.1
Manes.18G025338 Manihot esculenta HOM05D005922 ORTHO05D006934 5.9e-33 146.0 90 75.6
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 1.5e-28 131.3 112 59.8
Zm00001eb399130 Zea mays HOM05D005922 ORTHO05D006934 2.5e-23 114.0 87 58.6
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 3.6e-22 110.2 227 38.8
VMungo0251G2725 Vigna mungo HOM05D005922 ORTHO05D006934 8.1e-22 109.0 216 36.6
Oeu031680.1 Olea europaea HOM05D005922 ORTHO05D006934 4.4e-20 103.2 131 46.6
PRCOL_00005504 Prasinoderma coloniale HOM05D005922 ORTHO05D006934 2.2e-19 100.9 215 33.0
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 3.7e-19 100.1 102 47.1
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 3.7e-19 100.1 102 47.1
arahy.Tifrunner.gnm1.ann1.B3UXS8 Arachis hypogaea HOM05D005922 ORTHO05D006934 6.4e-19 99.4 63 73.0
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 1.3e-16 91.7 50 74.0
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 5.6e-15 86.3 60 61.7
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 9.5e-15 85.5 57 64.9
Haze_10820 Corylus avellana HOM05D005922 ORTHO05D006934 1.1e-13 82.0 87 55.2
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 4.0e-13 80.1 49 69.4
CDE11G0599 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 1.2e-12 78.6 58 62.1
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 2.0e-12 77.8 49 65.3
Manes.17G089020 Manihot esculenta HOM05D005922 ORTHO05D006934 2.4e-10 70.9 79 51.9
A02p14700 Brassica napus HOM05D005922 ORTHO05D006934 8.6e-08 62.4 181 27.6
BraA02t06537Z Brassica rapa HOM05D005922 ORTHO05D006934 8.6e-08 62.4 181 27.6


User provided reference genes

Program Settings