Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 3.3e-231 804.7 410 100.0
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 2.5e-162 575.9 421 72.4
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 4.6e-156 555.1 399 71.4
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 1.4e-152 543.5 397 70.5
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 1.4e-149 533.5 419 66.8
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 6.1e-148 528.1 399 67.7
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 1.8e-147 526.6 397 67.8
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 2.3e-147 526.2 410 66.3
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.1e-147 525.0 399 67.2
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 1.1e-146 523.9 423 67.1
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 2.5e-146 522.7 397 67.8
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 4.3e-146 521.9 403 66.3
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 1.4e-144 516.9 419 64.7
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 5.3e-144 515.0 425 65.2
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 9.0e-144 514.2 407 65.4
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 4.5e-143 511.9 373 71.6
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 5.9e-143 511.5 401 67.8
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 1.0e-142 510.8 424 64.4
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 1.7e-142 510.0 406 65.8
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 1.7e-142 510.0 403 68.0
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 2.2e-142 509.6 399 67.2
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 3.8e-142 508.8 455 60.2
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 3.8e-142 508.8 397 67.0
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 3.2e-141 505.8 408 63.0
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 5.5e-141 505.0 397 65.2
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 3.6e-140 502.3 411 66.9
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 7.9e-140 501.1 396 66.2
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 1.0e-139 500.7 434 63.1
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.4e-139 500.4 397 64.7
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 3.0e-139 499.2 414 65.5
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 8.8e-139 497.7 396 65.9
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 1.1e-138 497.3 399 65.7
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 3.3e-138 495.7 394 65.0
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 5.7e-138 495.0 394 64.5
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 7.4e-138 494.6 394 66.2
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 9.7e-138 494.2 394 64.5
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 1.3e-137 493.8 408 64.2
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 1.2e-135 487.3 458 56.6
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 2.0e-135 486.5 415 63.1
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 1.1e-133 480.7 396 64.6
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 2.1e-132 476.5 406 61.8
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 2.1e-132 476.5 398 64.3
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 7.9e-132 474.6 399 62.4
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 1.8e-131 473.4 417 62.6
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 3.0e-131 472.6 413 61.0
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 3.0e-131 472.6 427 60.7
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 3.0e-131 472.6 425 61.6
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 5.1e-131 471.9 397 63.0
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 1.1e-130 470.7 399 62.9
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 2.0e-130 469.9 417 62.4
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 2.6e-130 469.5 421 61.0
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 4.4e-130 468.8 423 61.0
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 4.4e-130 468.8 338 70.7
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 1.2e-127 460.7 398 61.8
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 1.5e-127 460.3 407 61.2
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 5.9e-127 458.4 338 70.4
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 2.2e-126 456.4 408 62.3
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 2.2e-126 456.4 408 62.3
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 2.9e-126 456.1 408 62.3
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 2.9e-126 456.1 408 62.3
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 3.8e-126 455.7 396 61.9
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 8.5e-126 454.5 395 62.3
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 1.5e-125 453.8 408 60.5
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 5.5e-125 451.8 355 65.6
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 9.4e-125 451.1 407 60.7
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 1.2e-124 450.7 409 60.9
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 3.6e-124 449.1 410 59.0
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 3.6e-124 449.1 365 64.9
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 6.1e-124 448.4 417 60.7
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 2.0e-122 443.4 438 58.4
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 1.7e-121 440.3 410 58.5
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 2.2e-121 439.9 410 58.5
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 2.8e-121 439.5 402 59.2
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 6.3e-121 438.3 410 58.3
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 6.3e-121 438.3 327 69.7
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 5.3e-120 435.3 417 60.0
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 1.6e-119 433.7 440 55.5
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.6e-119 433.0 325 68.6
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 6.5e-118 428.3 415 54.7
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.1e-117 427.6 388 57.0
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 1.1e-117 427.6 404 58.9
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 3.2e-117 426.0 410 58.0
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 3.6e-116 422.5 371 61.2
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 1.0e-115 421.0 431 53.4
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 3.0e-115 419.5 417 56.4
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 5.2e-115 418.7 447 53.0
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 1.5e-114 417.2 410 58.0
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 8.3e-113 411.4 425 54.4
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 8.3e-113 411.4 403 57.8
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 3.1e-112 409.5 348 63.8
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.0e-110 404.4 371 60.6
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 2.9e-110 402.9 429 55.2
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 7.2e-109 398.3 386 57.0
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 3.6e-108 396.0 321 64.8
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 9.8e-106 387.9 322 63.4
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 9.8e-106 387.9 331 63.1
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 6.3e-105 385.2 402 55.2
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.1e-104 384.4 409 53.3
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.1e-104 382.9 372 58.1
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.0e-99 365.9 281 67.6
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 3.4e-98 362.8 307 65.5
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 1.7e-97 360.5 330 60.0
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 1.7e-97 360.5 345 58.8
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 8.3e-97 358.2 281 67.3
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 2.4e-96 356.7 351 56.4
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 1.1e-93 347.8 329 59.6
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 4.3e-93 345.9 312 61.2
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 6.4e-89 332.0 445 47.0
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.4e-83 314.3 374 51.1
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 1.2e-71 274.6 216 63.4
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 1.2e-63 248.1 226 61.1
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 6.0e-63 245.7 412 37.9
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 3.9e-62 243.0 417 38.8
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 7.6e-58 228.8 323 45.2
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 4.8e-52 209.5 125 83.2
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 2.4e-51 207.2 149 75.8
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 6.7e-46 189.1 406 32.8
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 1.3e-44 184.9 124 72.6
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 1.0e-25 122.1 104 66.3
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 9.4e-24 115.5 89 68.5
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.1e-21 108.6 76 71.1
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 4.3e-21 106.7 81 67.9
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 5.7e-21 106.3 104 55.8
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 3.1e-19 100.5 103 51.5
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 3.4e-18 97.1 114 40.4
CBR_g10855 Chara braunii HOM05D005892 ORTHO05D007364 3.1e-11 73.9 156 32.1
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 5.3e-11 73.2 160 37.5
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 7.2e-08 62.8 106 39.6


User provided reference genes

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