Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 2.2e-134 482.3 242 100.0
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 5.5e-48 195.3 236 53.4
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 9.7e-45 184.5 265 47.9
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 4.8e-44 182.2 265 46.0
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 4.8e-44 182.2 230 50.0
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 3.1e-43 179.5 256 47.3
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 5.3e-43 178.7 228 51.8
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 5.9e-42 175.3 227 47.6
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.0e-41 174.5 227 52.4
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 3.8e-41 172.6 223 50.2
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 3.8e-41 172.6 225 48.9
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 6.5e-41 171.8 231 49.4
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 6.5e-41 171.8 254 47.6
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 1.1e-40 171.0 227 48.0
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 1.4e-40 170.6 238 49.6
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 1.4e-40 170.6 232 48.7
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 1.4e-40 170.6 251 46.2
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 3.2e-40 169.5 226 45.1
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.6e-39 167.2 229 49.8
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.6e-39 167.2 229 49.8
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.6e-39 167.2 229 49.8
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.6e-39 167.2 236 47.5
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 2.1e-39 166.8 266 44.0
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 2.7e-39 166.4 234 49.1
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 2.7e-39 166.4 238 47.1
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 3.6e-39 166.0 199 52.3
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 4.7e-39 165.6 229 51.5
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 4.7e-39 165.6 274 43.4
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 6.1e-39 165.2 228 48.7
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 1.0e-38 164.5 227 51.1
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.0e-38 164.5 273 44.0
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 1.4e-38 164.1 228 49.1
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 1.8e-38 163.7 283 45.2
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.8e-38 163.7 226 47.3
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 2.3e-38 163.3 232 48.7
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 3.0e-38 162.9 239 47.3
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 3.9e-38 162.5 303 41.3
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 5.1e-38 162.2 223 46.2
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 6.7e-38 161.8 238 47.5
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 1.1e-37 161.0 257 44.7
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 1.5e-37 160.6 242 47.9
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 3.3e-37 159.5 241 45.6
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 3.3e-37 159.5 253 47.4
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 5.7e-37 158.7 224 45.5
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 5.7e-37 158.7 247 47.4
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 9.7e-37 157.9 278 41.0
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 4.8e-36 155.6 261 44.8
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 6.3e-36 155.2 282 42.6
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 6.3e-36 155.2 282 42.6
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 8.2e-36 154.8 275 41.1
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 8.2e-36 154.8 202 49.0
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 2.4e-35 153.3 245 44.9
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 7.0e-35 151.8 289 41.5
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 9.1e-35 151.4 275 43.6
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 1.6e-34 150.6 230 48.3
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 1.3e-33 147.5 256 42.6
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 2.2e-33 146.7 253 47.0
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 2.9e-33 146.4 223 46.2
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 1.1e-32 144.4 194 51.5
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 3.2e-32 142.9 230 43.0
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 3.2e-32 142.9 241 45.2
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 4.2e-32 142.5 229 45.0
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 1.6e-31 140.6 233 47.2
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 1.0e-30 137.9 208 44.2
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.0e-30 137.9 223 47.1
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 1.0e-30 137.9 198 45.5
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 1.4e-30 137.5 197 48.7
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 1.4e-30 137.5 211 44.5
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 2.3e-30 136.7 263 41.4
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 3.0e-30 136.3 233 43.3
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 5.2e-30 135.6 231 45.0
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 5.2e-30 135.6 253 41.5
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 6.7e-30 135.2 244 42.6
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 1.1e-29 134.4 261 41.4
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 7.5e-29 131.7 271 39.9
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.3e-28 131.0 225 41.8
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.3e-28 131.0 226 44.2
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 8.2e-28 128.3 250 42.0
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 8.2e-28 128.3 219 45.7
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 8.2e-28 128.3 264 40.9
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.8e-27 127.1 235 43.4
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 1.8e-27 127.1 232 38.8
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 9.1e-27 124.8 228 43.0
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 9.1e-27 124.8 228 43.0
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 9.1e-27 124.8 228 43.0
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.6e-26 124.0 283 40.3
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 1.6e-26 124.0 270 38.5
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 2.0e-26 123.6 229 43.2
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 2.0e-26 123.6 217 43.3
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 3.5e-26 122.9 237 39.2
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 4.5e-26 122.5 219 44.7
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 5.9e-26 122.1 206 44.2
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 7.7e-26 121.7 238 40.8
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 1.3e-25 120.9 220 40.9
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 1.3e-25 120.9 195 44.6
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 3.8e-25 119.4 184 47.3
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 1.5e-24 117.5 240 41.2
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 1.9e-24 117.1 232 39.7
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 2.5e-24 116.7 232 39.7
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 5.5e-24 115.5 164 46.3
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 2.1e-23 113.6 231 37.7
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 3.6e-23 112.8 235 40.0
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 1.8e-22 110.5 152 48.7
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.8e-22 110.5 151 49.0
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 3.0e-22 109.8 159 48.4
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 5.2e-22 109.0 228 39.5
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 5.2e-22 109.0 227 41.9
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 3.4e-21 106.3 153 46.4
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 4.4e-21 105.9 254 36.2
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.3e-20 104.4 102 54.9
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 2.2e-20 103.6 229 38.4
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 3.7e-20 102.8 228 39.5
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 4.8e-20 102.4 100 57.0
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 6.3e-20 102.1 233 34.3
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.4e-19 100.9 100 56.0
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.4e-19 100.9 93 62.4
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.4e-19 100.9 93 62.4
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 3.1e-19 99.8 100 58.0
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 7.0e-19 98.6 100 55.0
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 1.6e-18 97.4 240 36.7
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 2.0e-18 97.1 210 38.1
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 2.7e-18 96.7 174 48.3
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 3.5e-18 96.3 242 36.8
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 1.0e-17 94.7 238 39.1
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 2.9e-17 93.2 259 34.0
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 3.2e-16 89.7 173 48.6
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 5.5e-16 89.0 277 31.8
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 9.4e-16 88.2 244 34.4
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 4.7e-15 85.9 155 45.8
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 6.1e-15 85.5 206 37.4
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 8.0e-15 85.1 206 37.4
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 2.3e-14 83.6 235 36.6
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 3.0e-14 83.2 80 62.5
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 6.8e-14 82.0 182 35.7
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 1.2e-13 81.3 200 37.0
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 4.4e-13 79.3 83 55.4
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.3e-12 77.8 222 32.9
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.4e-11 74.3 166 38.0
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.1e-11 73.2 106 43.4
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 1.6e-10 70.9 51 64.7
DCAR_007247 Daucus carota HOM05D004123 ORTHO05D004768 2.0e-10 70.5 225 32.9
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 2.7e-10 70.1 162 38.3
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 3.5e-10 69.7 118 37.3
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 3.5e-10 69.7 280 30.7
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 4.5e-10 69.3 64 57.8
ECA233G4891 Erigeron canadensis HOM05D004123 ORTHO05D004768 3.8e-09 66.2 163 36.2
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.8e-09 66.2 54 55.6
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 5.0e-09 65.9 55 56.4
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.5e-08 63.5 63 50.8
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 5.6e-08 62.4 158 32.9
Zm00001eb125440 Zea mays HOM05D004123 ORTHO05D004768 2.8e-07 60.1 155 35.5
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 4.7e-07 59.3 264 31.1
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 4.7e-07 59.3 104 44.2
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 4.7e-07 59.3 219 32.4
AT5G27880 Arabidopsis thaliana HOM05D008496 ORTHO05D010729 3.0e-06 56.6 172 30.8
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 3.0e-06 56.6 152 34.9
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 5.2e-06 55.8 40 60.0
SEGI_26835 Sequoiadendron giganteum HOM05D004123 ORTHO05D004768 6.8e-06 55.5 47 55.3
Thhalv10005521m.g Eutrema salsugineum HOM05D008496 ORTHO05D010729 8.9e-06 55.1 64 39.1


User provided reference genes

Program Settings