Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 5.4e-83 310.8 147 100.0
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 4.5e-61 238.0 140 76.4
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 3.9e-57 224.9 137 73.0
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 3.9e-57 224.9 137 73.0
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 5.3e-54 214.5 140 70.7
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 1.5e-53 213.0 139 70.5
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 4.5e-53 211.5 147 67.3
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 7.7e-53 210.7 137 67.9
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 7.7e-53 210.7 144 65.3
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 2.9e-52 208.8 138 68.1
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 5.0e-52 208.0 146 65.1
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 5.0e-52 208.0 146 64.4
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 5.0e-52 208.0 146 63.7
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 8.5e-52 207.2 136 69.1
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.1e-51 206.8 138 68.8
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 1.4e-51 206.5 144 66.7
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 1.4e-51 206.5 138 68.8
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 3.2e-51 205.3 140 68.6
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 4.2e-51 204.9 135 67.4
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 7.2e-51 204.1 135 65.2
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 9.4e-51 203.8 140 66.4
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 1.2e-50 203.4 137 65.7
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.6e-50 203.0 139 66.9
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 2.1e-50 202.6 136 67.6
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 2.7e-50 202.2 133 66.9
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 2.7e-50 202.2 135 66.7
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.7e-50 202.2 137 65.0
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 3.6e-50 201.8 127 71.7
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.6e-50 201.8 137 65.0
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 3.6e-50 201.8 143 63.6
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 7.9e-50 200.7 145 64.1
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.0e-49 200.3 137 65.0
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 1.0e-49 200.3 146 61.6
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 1.4e-49 199.9 141 62.4
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 1.4e-49 199.9 140 67.9
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.8e-49 199.5 141 65.2
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 1.8e-49 199.5 141 66.0
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 2.3e-49 199.1 138 66.7
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 3.9e-49 198.4 135 66.7
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 3.9e-49 198.4 135 66.7
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 3.9e-49 198.4 128 69.5
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 3.9e-49 198.4 150 64.0
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 5.1e-49 198.0 149 61.1
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 1.1e-48 196.8 140 64.3
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 1.5e-48 196.4 148 59.5
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 2.6e-48 195.7 140 62.9
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 4.4e-48 194.9 139 64.0
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 5.7e-48 194.5 139 65.5
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 5.7e-48 194.5 139 65.5
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 5.7e-48 194.5 157 58.0
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 5.7e-48 194.5 140 62.9
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 7.4e-48 194.1 140 65.0
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 9.7e-48 193.7 145 64.1
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 9.7e-48 193.7 140 61.4
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 9.7e-48 193.7 140 61.4
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 9.7e-48 193.7 138 65.2
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 9.7e-48 193.7 140 66.4
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 1.3e-47 193.4 157 58.0
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 1.3e-47 193.4 146 63.0
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.3e-47 193.4 134 67.9
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.3e-47 193.4 134 67.9
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 1.7e-47 193.0 146 63.0
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 1.7e-47 193.0 146 63.0
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.7e-47 193.0 137 64.2
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 2.2e-47 192.6 134 64.2
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.8e-47 192.2 137 60.6
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.8e-47 192.2 137 60.6
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 6.3e-47 191.0 134 62.7
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.1e-46 190.3 185 51.9
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 1.1e-46 190.3 146 61.0
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 1.4e-46 189.9 134 64.2
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 1.8e-46 189.5 140 61.4
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 2.4e-46 189.1 138 58.7
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 2.4e-46 189.1 136 65.4
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 3.1e-46 188.7 134 64.9
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 3.1e-46 188.7 147 60.5
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 4.1e-46 188.3 135 64.4
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 4.1e-46 188.3 137 58.4
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 5.3e-46 188.0 135 64.4
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 5.3e-46 188.0 135 64.4
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 5.3e-46 188.0 150 61.3
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 7.0e-46 187.6 136 60.3
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 9.1e-46 187.2 142 58.5
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 9.1e-46 187.2 137 61.3
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 1.5e-45 186.4 140 60.0
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 1.5e-45 186.4 136 63.2
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 1.5e-45 186.4 132 64.4
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 2.0e-45 186.0 132 62.9
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 2.0e-45 186.0 136 61.0
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 2.6e-45 185.7 134 62.7
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 2.6e-45 185.7 136 61.8
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 3.4e-45 185.3 135 63.7
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 4.5e-45 184.9 135 63.7
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 4.5e-45 184.9 144 61.1
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 7.7e-45 184.1 134 63.4
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 7.7e-45 184.1 139 60.4
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 7.7e-45 184.1 134 62.7
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 7.7e-45 184.1 134 62.7
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 7.7e-45 184.1 134 62.7
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 1.3e-44 183.3 136 61.0
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.3e-44 183.3 136 61.0
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 1.7e-44 183.0 134 64.2
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 5.0e-44 181.4 144 61.8
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 5.0e-44 181.4 134 61.2
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 5.0e-44 181.4 135 63.0
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 5.0e-44 181.4 143 58.0
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 1.1e-43 180.3 135 62.2
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-43 180.3 136 60.3
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.4e-43 179.9 136 60.3
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 1.4e-43 179.9 145 62.8
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.5e-43 179.1 139 59.0
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.2e-43 178.3 137 61.3
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 7.2e-43 177.6 133 57.9
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 9.4e-43 177.2 135 57.0
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 9.4e-43 177.2 138 61.6
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 1.6e-42 176.4 140 59.3
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 2.1e-42 176.0 135 61.5
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 2.1e-42 176.0 139 61.2
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 2.7e-42 175.6 140 60.0
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 2.7e-42 175.6 133 58.6
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.7e-42 175.6 133 58.6
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 2.7e-42 175.6 139 59.7
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 1.4e-41 173.3 117 72.6
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.4e-41 173.3 135 60.7
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 1.4e-41 173.3 139 59.0
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.8e-41 172.9 140 55.0
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 1.8e-41 172.9 136 60.3
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 3.0e-41 172.2 134 60.4
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.9e-41 171.8 135 60.0
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 3.9e-41 171.8 139 58.3
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 1.5e-40 169.9 137 60.6
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 1.5e-40 169.9 132 59.8
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 3.3e-40 168.7 135 59.3
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 9.7e-40 167.2 134 62.7
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 9.7e-40 167.2 138 58.7
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 2.8e-39 165.6 138 58.7
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 4.8e-39 164.9 135 57.8
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 8.2e-39 164.1 112 67.0
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 5.3e-38 161.4 141 52.5
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 5.3e-38 161.4 135 57.8
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 2.0e-37 159.5 134 57.5
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 4.5e-37 158.3 140 50.7
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 1.5e-35 153.3 137 51.1
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 2.1e-34 149.4 140 50.0
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 6.7e-33 144.4 143 51.0
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.8e-33 144.1 200 40.0
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.2e-32 143.7 147 49.7
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 1.5e-32 143.3 97 61.9
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.7e-29 132.5 135 51.1
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 1.3e-28 130.2 96 59.4
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 2.2e-28 129.4 135 48.9
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 2.3e-25 119.4 134 47.0
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 2.2e-23 112.8 130 49.2
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 1.4e-22 110.2 75 70.7
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 4.1e-22 108.6 130 46.2
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 2.9e-20 102.4 130 40.0
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 5.0e-20 101.7 104 49.0
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.1e-19 100.5 116 44.8
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 1.5e-16 90.1 66 68.2
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 6.3e-15 84.7 62 66.1
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.3e-15 84.3 64 64.1
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 5.4e-14 81.6 52 63.5
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 9.2e-14 80.9 50 62.0
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.7e-13 79.3 74 44.6
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 4.5e-13 78.6 103 42.7
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 5.9e-13 78.2 57 64.9
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 1.4e-09 67.0 65 50.8
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 7.5e-08 61.2 40 57.5


User provided reference genes

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