Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 0.0e+00 1581.2 861 100.0
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 0.0e+00 1080.1 837 73.1
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 7.1e-308 1060.4 827 70.9
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 4.9e-301 1037.7 829 70.0
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 2.8e-296 1021.9 832 67.5
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 1.8e-295 1019.2 831 67.1
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.4e-292 1009.6 846 68.0
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 1.2e-291 1006.5 832 67.7
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 8.2e-288 993.8 837 66.3
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 1.8e-287 992.6 838 66.1
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 4.5e-286 988.0 836 66.3
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 7.7e-286 987.3 832 63.6
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 1.0e-285 986.9 832 65.4
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 7.2e-284 980.7 832 64.7
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 7.9e-283 977.2 836 65.9
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 3.9e-282 974.9 833 64.5
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 6.7e-282 974.2 832 66.5
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 4.3e-281 971.5 841 64.4
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.3e-280 969.9 834 63.3
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 8.2e-280 967.2 841 66.1
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 6.9e-279 964.1 832 64.2
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.7e-277 959.5 842 62.1
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 6.5e-277 957.6 832 64.4
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 1.9e-276 956.1 839 63.2
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 2.5e-276 955.7 837 63.0
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 5.5e-276 954.5 836 63.8
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 5.5e-276 954.5 829 63.1
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 2.7e-275 952.2 831 62.3
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 3.6e-275 951.8 838 62.9
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 7.9e-275 950.7 828 63.5
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 1.4e-274 949.9 834 61.6
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 1.4e-274 949.9 850 62.9
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 2.3e-274 949.1 842 61.3
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 5.1e-274 948.0 835 63.0
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 5.1e-274 948.0 837 63.2
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.4e-273 944.9 842 60.8
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 7.4e-273 944.1 864 61.9
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 1.7e-272 943.0 837 60.9
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.2e-272 942.6 831 61.1
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.7e-272 941.8 838 61.0
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 1.4e-271 939.9 829 61.3
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 3.1e-271 938.7 838 61.0
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 3.1e-271 938.7 832 61.4
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 5.3e-271 937.9 836 60.9
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 1.2e-270 936.8 836 61.2
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 3.5e-270 935.3 842 61.6
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 3.5e-270 935.3 840 63.6
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 1.3e-269 933.3 835 60.8
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 8.5e-269 930.6 835 61.2
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 8.5e-269 930.6 837 60.0
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 1.4e-268 929.9 831 62.0
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 9.4e-268 927.2 831 60.9
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 3.0e-266 922.2 831 61.6
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.2e-264 916.0 838 62.2
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 1.4e-263 913.3 832 60.8
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 5.3e-263 911.4 834 59.6
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 5.9e-262 907.9 828 61.5
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 3.8e-261 905.2 832 64.3
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 3.8e-261 905.2 927 56.3
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 5.0e-261 904.8 831 59.0
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 5.0e-261 904.8 836 61.0
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 9.4e-260 900.6 838 60.6
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 2.3e-258 896.0 830 58.6
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 2.3e-258 896.0 839 60.4
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 3.3e-257 892.1 832 61.2
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 9.7e-257 890.6 841 61.1
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 6.3e-256 887.9 832 59.6
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 2.5e-252 875.9 839 57.8
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 2.7e-251 872.5 832 61.7
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 5.2e-250 868.2 831 60.5
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.8e-247 859.8 836 59.4
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 2.1e-243 846.3 838 60.3
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 1.5e-241 840.1 833 59.5
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 1.6e-238 830.1 783 60.7
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 2.9e-237 825.9 876 55.5
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 3.4e-233 812.4 835 53.4
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.9e-231 806.6 828 55.3
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 6.0e-230 801.6 814 54.5
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 1.3e-229 800.4 839 56.0
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 1.9e-228 796.6 840 54.4
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 9.5e-228 794.3 834 53.2
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 1.4e-226 790.4 824 55.5
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 1.4e-226 790.4 824 55.5
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 1.8e-226 790.0 834 53.8
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 4.0e-226 788.9 838 54.5
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 3.4e-225 785.8 824 56.2
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 3.4e-225 785.8 824 56.2
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 4.4e-225 785.4 824 55.5
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 1.4e-223 780.4 859 51.5
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 5.4e-223 778.5 833 53.4
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 1.7e-221 773.5 857 50.6
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 4.4e-217 758.8 831 54.3
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 1.3e-216 757.3 837 53.0
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 1.9e-215 753.4 845 53.6
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 6.0e-206 721.8 835 50.8
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 8.1e-203 711.4 815 51.4
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 1.6e-198 697.2 688 56.2
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 1.9e-196 690.3 680 57.2
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 5.8e-193 678.7 843 48.2
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 8.1e-187 658.3 622 57.2
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 4.0e-186 656.0 548 62.2
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.6e-185 653.3 607 63.1
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 7.6e-177 625.2 605 62.0
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 1.7e-155 554.3 447 66.0
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 1.3e-147 528.1 872 39.7
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.3e-141 507.3 487 62.8
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 6.3e-139 499.2 839 41.6
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 1.1e-135 488.4 871 39.8
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 1.3e-128 464.9 376 65.2
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.5e-127 461.5 448 62.7
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 9.5e-127 458.8 792 40.8
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.0e-120 438.7 388 62.1
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 8.9e-117 425.6 308 71.8
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 6.4e-107 392.9 427 52.7
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 3.2e-106 390.6 637 38.0
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 7.8e-105 386.0 290 69.7
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 3.2e-90 337.4 325 59.7
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 4.6e-81 307.0 234 68.8
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 1.1e-79 302.4 234 67.1
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 5.6e-79 300.1 200 76.0
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 2.1e-78 298.1 451 41.2
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 1.8e-77 295.0 295 61.4
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 7.6e-76 289.7 337 48.1
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 2.8e-70 271.2 228 63.6
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 4.8e-62 243.8 824 29.2
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 1.7e-59 235.3 195 61.5
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 5.0e-59 233.8 157 73.2
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 1.4e-58 232.3 213 56.3
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 6.9e-53 213.4 269 52.0
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.4e-45 188.3 181 55.8
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 2.9e-43 181.4 208 51.9
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.2e-42 177.6 153 61.4
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.3e-40 171.8 145 63.4
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 2.6e-36 158.3 155 56.1
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 2.1e-33 148.7 170 49.4
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.0e-32 144.8 182 47.8
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.5e-31 142.5 106 68.9
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 1.6e-28 132.5 612 24.7
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 1.0e-27 129.8 521 24.0
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 5.5e-26 124.0 723 24.3
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 3.6e-25 121.3 278 37.4
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 1.2e-23 116.3 273 37.0
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 1.2e-23 116.3 106 57.5
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 7.5e-23 113.6 287 35.2
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 7.5e-23 113.6 73 68.5
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 6.3e-22 110.5 76 72.4
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 1.7e-19 102.4 93 61.3
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 1.6e-17 95.9 102 51.0
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 9.2e-13 80.1 128 46.1
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 1.7e-11 75.9 69 58.0
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.7e-11 75.9 70 55.7
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 2.9e-11 75.1 65 58.5
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.9e-11 75.1 63 55.6
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 3.3e-10 71.6 87 49.4
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 5.6e-10 70.9 203 37.9
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 1.6e-09 69.3 184 42.9
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 3.4e-07 61.6 191 40.3
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 2.2e-06 58.9 92 43.5


User provided reference genes

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