Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 0.0e+00 2157.9 1107 100.0
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1208.7 1289 52.4
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1133.2 1285 50.1
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 0.0e+00 1131.7 1281 49.8
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1124.8 1286 49.8
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 0.0e+00 1118.2 1276 50.4
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 0.0e+00 1109.4 1291 49.9
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 0.0e+00 1109.0 1307 48.6
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1108.2 1286 49.6
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 0.0e+00 1107.0 1280 49.7
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1087.8 1284 48.8
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 0.0e+00 1085.9 1295 47.3
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 0.0e+00 1077.8 1283 47.9
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 4.4e-310 1068.1 1312 48.6
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 1.7e-306 1056.2 1309 48.1
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 1.9e-305 1052.7 1152 51.0
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 6.1e-304 1047.7 1282 45.3
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 3.0e-303 1045.4 1268 46.4
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 1.7e-301 1039.6 1281 48.0
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 2.0e-299 1032.7 1300 44.8
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 2.0e-294 1016.1 1393 44.3
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 1.7e-293 1013.1 1294 46.2
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 5.4e-292 1008.1 1281 46.0
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 9.2e-292 1007.3 1324 45.0
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 1.5e-289 1000.0 1282 44.9
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 1.1e-287 993.8 1273 44.8
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 5.2e-287 991.5 1306 45.9
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 1.2e-286 990.3 1156 49.6
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 2.9e-285 985.7 1273 45.3
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 8.3e-285 984.2 1349 42.6
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 1.1e-284 983.8 1268 45.5
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 1.4e-284 983.4 1282 44.3
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 9.2e-284 980.7 1282 44.9
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 1.2e-283 980.3 1282 44.5
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 1.3e-282 976.9 1297 43.6
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 1.7e-282 976.5 1263 45.1
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.2e-280 970.3 1304 43.4
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 1.2e-280 970.3 1288 43.9
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 4.0e-279 965.3 1284 44.6
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 1.2e-278 963.8 755 66.2
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 2.2e-277 959.5 1271 43.8
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 2.2e-277 959.5 1279 43.2
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 9.2e-276 954.1 1301 43.5
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 3.5e-275 952.2 1283 43.5
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 7.8e-275 951.0 1307 43.4
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 1.3e-274 950.3 1260 44.0
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 8.6e-274 947.6 1271 43.4
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 2.5e-273 946.0 1150 47.3
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 9.6e-273 944.1 1260 44.2
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 9.6e-273 944.1 1286 43.3
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 2.0e-270 936.4 1278 42.4
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 2.6e-270 936.0 1290 43.3
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 9.9e-270 934.1 1290 43.4
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 1.2e-267 927.2 1289 42.7
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 6.2e-264 914.8 1315 42.0
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 4.9e-261 905.2 1283 42.9
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 1.1e-257 894.0 1274 42.4
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 5.6e-257 891.7 1260 41.1
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 5.6e-257 891.7 1284 41.9
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 9.9e-254 880.9 1301 41.1
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 1.3e-253 880.6 1137 44.9
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 3.8e-253 879.0 1298 40.2
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 9.3e-252 874.4 1297 40.9
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 2.7e-251 872.8 1288 41.1
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 3.5e-251 872.5 1179 44.2
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 4.3e-249 865.5 1303 39.9
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 1.3e-248 864.0 1297 40.6
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 2.7e-243 846.3 1301 39.7
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 2.3e-242 843.2 1290 40.4
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 1.1e-241 840.9 1279 39.6
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 2.8e-240 836.3 1279 39.6
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 2.8e-240 836.3 1279 39.6
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 9.0e-239 831.2 1147 42.5
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 3.4e-238 829.3 1302 39.4
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 2.9e-237 826.2 1038 45.7
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 1.8e-234 817.0 767 57.6
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 1.3e-232 810.8 1055 45.1
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 6.3e-232 808.5 1260 39.0
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 1.1e-228 797.7 1120 42.2
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 5.1e-226 788.9 1226 39.2
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 4.8e-224 782.3 754 56.4
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 2.0e-222 776.9 1283 37.8
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 1.3e-216 757.7 1129 40.7
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 3.8e-213 746.1 1003 43.4
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 6.3e-208 728.8 1199 38.5
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 1.6e-206 724.2 1239 37.5
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 4.7e-203 712.6 1215 37.9
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 1.0e-202 711.4 892 46.9
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 1.1e-183 648.3 711 48.2
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 1.0e-178 631.7 717 51.0
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 2.6e-177 627.1 764 45.4
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 2.2e-176 624.0 1133 36.0
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 1.6e-166 591.3 1148 34.2
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 8.4e-160 568.9 1042 36.0
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 9.9e-145 518.8 760 39.6
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 1.3e-144 518.5 1339 30.1
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 3.6e-139 500.4 1027 33.9
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 5.6e-132 476.5 651 42.9
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 3.0e-117 427.6 344 66.6
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 1.4e-111 408.7 364 62.1
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 2.0e-105 388.3 632 38.0
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 7.5e-92 343.2 356 48.3
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 1.9e-87 328.6 343 53.6
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 5.7e-84 317.0 608 37.5
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 5.9e-81 307.0 1230 25.2
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 3.6e-78 297.7 356 49.7
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 7.7e-73 280.0 391 40.2
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 2.9e-72 278.1 388 39.7
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 2.8e-70 271.6 1265 24.1
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 2.8e-70 271.6 579 33.3
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 2.4e-66 258.5 346 43.9
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 4.1e-66 257.7 372 40.6
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 5.2e-61 240.7 284 46.5
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 1.4e-50 206.1 1254 20.5
SHI01039 Sapria himalayana HOM05D005651 ORTHO05D006877 4.9e-43 181.0 165 55.2
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 5.4e-42 177.6 192 51.0
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 1.9e-39 169.1 138 60.9
Ah.04g149630 Amaranthus hybridus HOM05D005651 ORTHO05D006877 6.0e-33 147.5 135 55.6
Lalb_Chr24g0394541 Lupinus albus HOM05D005651 ORTHO05D006877 1.0e-32 146.7 134 59.7
BraA03t12111Z Brassica rapa HOM05D005651 ORTHO05D006877 2.5e-31 142.1 151 49.7
unitig_748.g8007 Utricularia gibba HOM05D005651 ORTHO05D006877 2.2e-27 129.0 212 35.8
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 2.7e-25 122.1 116 56.0
FAN22G0619 Fragaria x ananassa HOM05D005651 ORTHO05D006877 2.8e-22 112.1 128 50.8
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 3.7e-22 111.7 110 53.6
Lj5P691T0 Lonicera japonica HOM05D005651 ORTHO05D006877 1.4e-21 109.8 117 56.4
TAR633G2085 Trochodendron aralioides HOM05D005651 ORTHO05D006877 1.3e-14 86.7 115 46.1
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 2.0e-12 79.3 65 58.5
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 1.3e-11 76.6 254 28.3
CBR_g39378 Chara braunii HOM05D005651 ORTHO05D006877 6.7e-08 64.3 146 28.1
SHI01042 Sapria himalayana HOM05D005651 ORTHO05D006877 9.7e-07 60.5 59 55.9


User provided reference genes

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