Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 5.5e-190 667.5 350 100.0
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 1.2e-93 347.4 310 59.4
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 1.2e-91 340.9 329 54.1
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 4.4e-91 339.0 314 58.0
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 2.9e-90 336.3 315 57.1
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 4.2e-89 332.4 306 58.8
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.2e-88 330.9 308 56.8
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.9e-86 323.6 316 56.6
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 7.3e-86 321.6 307 57.3
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.6e-83 313.2 306 54.9
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 7.6e-83 311.6 306 54.6
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 1.3e-82 310.8 306 54.6
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 6.4e-82 308.5 303 55.4
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.4e-81 307.4 309 53.4
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 1.4e-81 307.4 307 55.7
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 1.9e-81 307.0 311 54.7
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 1.9e-81 307.0 311 54.7
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 9.3e-81 304.7 309 54.0
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 3.5e-80 302.8 304 54.6
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 7.9e-80 301.6 306 52.9
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 1.3e-79 300.8 321 51.4
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 8.7e-79 298.1 307 55.0
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 2.5e-78 296.6 311 52.4
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 4.3e-78 295.8 303 53.8
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 4.3e-78 295.8 311 52.7
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 4.3e-78 295.8 305 53.1
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 3.7e-77 292.7 305 51.5
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 8.1e-77 291.6 307 53.1
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 2.4e-76 290.0 311 53.1
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 2.4e-76 290.0 303 52.8
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 4.0e-76 289.3 306 52.0
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 9.0e-76 288.1 304 53.6
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 1.2e-75 287.7 303 53.8
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 2.6e-75 286.6 308 53.2
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 5.8e-75 285.4 309 50.5
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 7.6e-75 285.0 304 52.0
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 9.9e-75 284.6 305 55.1
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 3.8e-74 282.7 347 48.1
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 4.9e-74 282.3 304 54.3
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 6.4e-74 282.0 304 51.3
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 6.4e-74 282.0 304 51.0
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 1.4e-73 280.8 306 52.0
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 1.4e-73 280.8 310 51.0
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.4e-73 280.8 304 51.6
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 2.5e-73 280.0 303 53.1
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 2.5e-73 280.0 305 54.4
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 7.1e-73 278.5 306 49.7
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 7.1e-73 278.5 310 50.3
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 1.2e-72 277.7 311 50.2
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 6.0e-72 275.4 303 52.1
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 1.0e-71 274.6 308 51.6
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 5.1e-71 272.3 311 50.8
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.7e-71 271.9 307 49.2
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 1.1e-70 271.2 309 50.8
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 1.5e-70 270.8 304 52.0
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 1.5e-70 270.8 304 51.6
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 3.3e-70 269.6 304 52.3
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 5.6e-70 268.9 303 51.5
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 9.6e-70 268.1 303 48.2
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 1.3e-69 267.7 305 51.5
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.6e-69 267.3 310 49.0
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 2.1e-69 266.9 303 48.2
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 2.8e-69 266.5 307 50.2
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.7e-69 266.2 310 48.7
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 3.7e-69 266.2 305 49.5
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.8e-68 263.8 310 48.4
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 2.4e-68 263.5 312 47.8
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 4.0e-68 262.7 306 46.7
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 5.3e-68 262.3 303 50.5
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.9e-68 261.9 302 49.7
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 1.2e-67 261.2 306 48.4
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 5.8e-67 258.8 303 50.8
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 7.6e-67 258.5 302 49.3
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 1.7e-66 257.3 302 49.7
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 2.2e-66 256.9 306 49.7
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 3.8e-66 256.1 304 45.1
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 6.5e-66 255.4 302 49.3
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 6.5e-66 255.4 303 44.6
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 8.4e-66 255.0 303 47.5
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 8.4e-66 255.0 315 48.6
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 3.2e-65 253.1 303 49.8
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 3.2e-65 253.1 306 49.0
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 4.2e-65 252.7 306 44.8
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 1.6e-64 250.8 304 50.0
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 2.7e-64 250.0 304 49.7
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 6.0e-64 248.8 309 45.3
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 1.0e-63 248.1 305 45.9
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 1.3e-63 247.7 309 46.3
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 3.9e-63 246.1 325 46.2
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 8.7e-63 245.0 302 48.7
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 8.7e-63 245.0 304 46.7
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 4.3e-62 242.7 305 43.6
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 5.7e-62 242.3 305 44.6
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 5.7e-62 242.3 305 44.6
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 9.7e-62 241.5 308 46.8
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 9.7e-62 241.5 305 45.9
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 1.3e-61 241.1 305 45.9
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 6.3e-61 238.8 305 43.6
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 6.3e-61 238.8 303 45.2
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 6.3e-61 238.8 305 43.6
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 1.4e-60 237.7 306 44.8
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 2.4e-60 236.9 304 46.7
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 3.1e-60 236.5 303 45.2
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 4.1e-60 236.1 304 47.4
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 5.3e-60 235.7 305 46.9
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 2.0e-59 233.8 303 44.9
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 3.4e-59 233.0 308 44.5
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 1.0e-58 231.5 303 44.2
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 1.7e-58 230.7 305 43.9
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 1.7e-58 230.7 303 44.2
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 2.2e-58 230.3 305 43.3
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 3.8e-58 229.6 306 42.8
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 3.8e-58 229.6 306 42.8
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.1e-57 228.0 305 43.6
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 3.2e-57 226.5 331 39.9
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 3.2e-57 226.5 305 43.0
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 3.2e-57 226.5 305 43.3
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 3.2e-57 226.5 304 47.7
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 7.2e-57 225.3 305 43.0
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 7.2e-57 225.3 305 43.0
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 7.2e-57 225.3 310 46.1
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.4e-55 221.1 305 43.0
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 1.1e-52 211.5 303 42.2
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 1.8e-52 210.7 238 49.2
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 1.5e-51 207.6 334 41.6
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 9.7e-46 188.3 310 39.0
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 1.3e-45 188.0 238 45.8
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 1.8e-44 184.1 199 52.8
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 5.0e-42 176.0 243 43.2
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 6.1e-40 169.1 314 34.4
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.2e-26 124.0 127 48.8
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 5.0e-26 122.9 152 43.4
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 1.5e-25 121.3 108 61.1
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.9e-25 120.9 129 46.5
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.0e-23 115.2 122 48.4
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 1.0e-23 115.2 259 32.4
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 4.0e-23 113.2 263 33.1
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 2.0e-22 110.9 253 30.8
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 7.5e-22 109.0 113 55.8
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 6.3e-21 105.9 202 36.6
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.8e-20 104.4 116 45.7
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 5.4e-20 102.8 327 30.3
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 2.5e-17 94.0 332 30.1
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 3.3e-17 93.6 126 39.7
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 7.2e-17 92.4 91 48.4
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 9.5e-17 92.0 288 27.4
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 4.1e-12 76.6 328 25.6
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 7.0e-12 75.9 114 39.5
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 3.5e-11 73.6 75 44.0
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 2.9e-10 70.5 84 44.0
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 2.9e-10 70.5 84 44.0
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 1.5e-06 58.2 57 50.9
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 5.8e-06 56.2 57 50.9
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 5.8e-06 56.2 54 51.9
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 9.8e-06 55.5 53 54.7
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 9.8e-06 55.5 57 50.9


User provided reference genes

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