Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 0.0e+00 1112.8 596 100.0
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 1.7e-98 364.4 619 42.0
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 1.2e-88 331.6 632 38.1
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 3.5e-88 330.1 666 39.0
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 3.0e-87 327.0 612 39.4
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 3.9e-87 326.6 605 40.3
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 5.6e-86 322.8 618 38.7
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 2.8e-85 320.5 673 37.1
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 3.6e-85 320.1 625 38.6
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 2.2e-82 310.8 639 36.9
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 4.9e-82 309.7 630 38.7
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 5.4e-81 306.2 625 36.8
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 2.1e-80 304.3 627 36.8
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 3.5e-80 303.5 613 35.7
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 3.5e-80 303.5 625 36.6
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 3.0e-79 300.4 628 37.3
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 4.3e-78 296.6 586 38.4
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 9.6e-78 295.4 630 37.8
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 9.6e-78 295.4 680 35.1
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 1.6e-77 294.7 631 37.9
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 5.3e-76 289.7 638 36.1
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 1.2e-75 288.5 644 36.2
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 1.5e-75 288.1 620 37.4
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 4.9e-74 283.1 626 35.5
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 9.3e-73 278.9 655 35.3
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 4.6e-72 276.6 625 35.2
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 6.0e-72 276.2 624 34.9
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.1e-70 271.9 626 34.3
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 2.5e-70 270.8 624 35.6
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 7.4e-70 269.2 617 35.0
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 4.8e-69 266.5 608 35.5
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 1.1e-68 265.4 628 35.5
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 3.1e-68 263.8 632 34.5
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 4.0e-68 263.5 662 34.7
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 1.5e-67 261.5 645 33.5
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 2.0e-67 261.2 659 34.0
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.6e-67 260.8 661 33.7
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.4e-67 260.4 663 33.9
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 7.6e-67 259.2 615 33.5
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 1.0e-66 258.8 648 35.5
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.3e-66 258.5 670 33.1
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 1.7e-66 258.1 672 32.9
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 4.9e-66 256.5 673 34.0
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 8.4e-66 255.8 649 34.2
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 1.9e-65 254.6 644 33.7
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 2.5e-65 254.2 679 33.0
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 7.1e-65 252.7 661 32.5
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.6e-64 251.5 643 31.1
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 1.6e-64 251.5 673 33.9
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 2.1e-64 251.1 623 34.2
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.3e-63 247.7 645 34.1
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 3.0e-63 247.3 618 34.8
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 5.1e-63 246.5 620 35.6
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.5e-62 245.0 668 31.4
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 1.3e-61 241.9 611 36.2
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 1.3e-61 241.9 663 31.2
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 1.6e-61 241.5 596 36.9
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 4.8e-61 240.0 631 35.3
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 4.8e-61 240.0 594 36.9
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 6.2e-61 239.6 610 36.1
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 8.2e-61 239.2 700 31.6
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 4.1e-60 236.9 619 33.6
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 6.9e-60 236.1 607 32.5
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 6.9e-60 236.1 608 33.1
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 2.0e-59 234.6 707 32.2
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 1.0e-58 232.3 654 32.3
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 1.0e-58 232.3 639 33.5
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 1.7e-58 231.5 609 36.1
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 2.2e-58 231.1 628 32.0
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 1.1e-57 228.8 672 31.0
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.4e-57 228.4 607 32.6
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.5e-57 227.6 543 35.2
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 4.6e-56 223.4 602 33.9
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.8e-55 221.5 663 30.9
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 8.7e-55 219.2 626 36.7
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.9e-54 218.0 614 33.7
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 2.8e-53 214.2 606 31.8
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 2.8e-53 214.2 813 28.3
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 3.7e-53 213.8 709 31.9
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 3.7e-53 213.8 811 29.0
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 4.8e-53 213.4 686 31.0
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 6.3e-53 213.0 615 32.4
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 2.4e-52 211.1 627 35.1
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 2.4e-52 211.1 828 27.9
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 5.3e-52 209.9 603 31.3
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 9.0e-52 209.1 574 32.2
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 2.0e-51 208.0 593 33.7
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 4.5e-51 206.8 657 31.1
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 2.2e-50 204.5 596 34.1
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.9e-50 204.1 623 32.3
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 8.5e-50 202.6 704 30.0
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 1.4e-49 201.8 627 30.6
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 1.9e-49 201.4 597 33.2
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 4.2e-49 200.3 733 28.9
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 5.5e-49 199.9 573 33.3
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 1.2e-48 198.7 510 33.5
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 1.6e-48 198.4 568 35.9
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 7.9e-48 196.1 736 29.1
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 1.0e-47 195.7 496 33.3
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 1.0e-47 195.7 665 33.5
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.8e-47 194.9 602 28.6
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 2.3e-47 194.5 569 32.3
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 1.1e-46 192.2 682 31.2
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 2.2e-45 188.0 672 30.4
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 2.2e-45 188.0 636 34.7
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 1.8e-44 184.9 648 29.6
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 5.3e-44 183.3 651 31.2
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 5.0e-42 176.8 650 29.1
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 2.5e-41 174.5 877 26.6
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 5.5e-41 173.3 598 30.3
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 3.0e-39 167.5 666 32.1
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 1.1e-38 165.6 662 28.7
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 2.6e-38 164.5 618 30.3
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 7.0e-36 156.4 220 42.7
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.2e-32 145.6 577 29.5
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 2.1e-32 144.8 651 28.4
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.0e-31 142.5 154 47.4
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 1.0e-31 142.5 247 38.5
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 5.2e-31 140.2 519 28.5
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 6.7e-31 139.8 468 30.8
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 3.3e-30 137.5 590 28.8
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 7.5e-30 136.3 323 36.8
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 1.3e-29 135.6 586 29.5
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.6e-27 128.6 430 29.5
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 5.9e-27 126.7 609 26.9
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 1.7e-26 125.2 586 27.0
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 2.9e-26 124.4 674 26.3
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 6.5e-26 123.2 330 40.0
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 6.1e-24 116.7 234 41.9
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.0e-23 115.9 235 41.7
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 6.8e-23 113.2 359 31.8
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 9.8e-22 109.4 302 35.4
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 2.2e-21 108.2 137 46.7
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 6.3e-21 106.7 631 25.2
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 3.1e-20 104.4 396 30.8
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 4.1e-20 104.0 110 57.3
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 9.1e-20 102.8 299 33.8
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 1.2e-19 102.4 398 30.4
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 3.8e-18 97.4 512 26.8
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 5.0e-18 97.1 113 54.0
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 5.0e-18 97.1 168 41.7
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 9.4e-17 92.8 369 30.1
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 1.6e-16 92.0 390 29.7
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 6.1e-16 90.1 317 30.6
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 6.1e-16 90.1 344 27.9
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 2.2e-13 81.6 403 30.3
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 6.3e-13 80.1 120 36.7
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 8.3e-13 79.7 365 27.4
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 1.4e-12 79.0 115 47.0
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 1.9e-09 68.6 75 50.7
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 4.3e-09 67.4 116 37.1
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.2e-08 65.9 163 33.7
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 4.7e-08 63.9 185 31.9
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 8.0e-08 63.2 211 28.0
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 1.0e-07 62.8 77 44.2
Lsat_1_v5_gn_3_132580 Lactuca sativa HOM05D000186 ORTHO05D004739 3.0e-07 61.2 272 29.4
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.0e-06 58.5 82 45.1
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 9.8e-06 56.2 285 30.9


User provided reference genes

Program Settings