Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_026472 Daucus carota HOM05D004825 ORTHO05D005415 1.5e-148 529.6 300 100.0
Actinidia06813 Actinidia chinensis HOM05D004825 ORTHO05D005415 1.9e-26 124.0 90 63.3
Eucgr.B01387 Eucalyptus grandis HOM05D004825 ORTHO05D005415 2.5e-26 123.6 91 61.5
QL02p047782 Quercus lobata HOM05D004825 ORTHO05D005415 5.6e-26 122.5 90 60.0
AUR62006702 Chenopodium quinoa HOM05D004825 ORTHO05D005415 1.2e-25 121.3 90 60.0
Cfa006284 Carpinus fangiana HOM05D004825 ORTHO05D005415 2.8e-25 120.2 90 57.8
Cc09_g03390 Coffea canephora HOM05D004825 ORTHO05D005415 2.8e-25 120.2 90 60.0
Haze_04525 Corylus avellana HOM05D004825 ORTHO05D005415 2.8e-25 120.2 90 57.8
MD12G1258300 Malus domestica HOM05D004825 ORTHO05D005415 8.1e-25 118.6 91 58.2
TAR374G0592 Trochodendron aralioides HOM05D004825 ORTHO05D005415 8.1e-25 118.6 87 62.1
MSTRG.10886 Avicennia marina HOM05D004825 ORTHO05D005415 3.1e-24 116.7 91 57.1
Manes.09G184100 Manihot esculenta HOM05D004825 ORTHO05D005415 5.2e-24 115.9 90 55.6
Nitab4.5_0000167g0010 Nicotiana tabacum HOM05D004825 ORTHO05D005415 5.2e-24 115.9 90 58.9
Lj1g0016449 Lotus japonicus HOM05D004825 ORTHO05D005415 6.9e-24 115.5 89 58.4
AUR62000357 Chenopodium quinoa HOM05D004825 ORTHO05D005415 8.9e-24 115.2 90 56.7
Hund07323 Selenicereus undatus HOM05D004825 ORTHO05D005415 2.0e-23 114.0 103 52.4
Nitab4.5_0004158g0060 Nicotiana tabacum HOM05D004825 ORTHO05D005415 2.6e-23 113.6 90 57.8
TWI59G0982 Tripterygium wilfordii HOM05D004825 ORTHO05D005415 2.6e-23 113.6 90 57.8
Ah.06g195620 Amaranthus hybridus HOM05D004825 ORTHO05D005415 3.4e-23 113.2 87 56.3
Aqoxy1G01799 Aquilegia oxysepala HOM05D004825 ORTHO05D005415 4.4e-23 112.8 86 54.7
Ciclev10007912m.g Citrus clementina HOM05D004825 ORTHO05D005415 7.6e-23 112.1 91 57.1
CANSAT54G0263 Cannabis sativa HOM05D004825 ORTHO05D005415 9.9e-23 111.7 90 53.3
Migut.I01185 Erythranthe guttata HOM05D004825 ORTHO05D005415 9.9e-23 111.7 88 58.0
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 1.3e-22 111.3 91 58.2
arahy.Tifrunner.gnm1.ann1.B3BVJM Arachis hypogaea HOM05D004825 ORTHO05D005415 1.3e-22 111.3 89 58.4
arahy.Tifrunner.gnm1.ann1.T0KW2L Arachis hypogaea HOM05D004825 ORTHO05D005415 1.3e-22 111.3 89 58.4
Glyma.18G240200 Glycine max HOM05D004825 ORTHO05D005415 1.3e-22 111.3 90 56.7
Phvul.008G056000 Phaseolus vulgaris HOM05D004825 ORTHO05D005415 1.3e-22 111.3 90 56.7
Gohir.D09G053068 Gossypium hirsutum HOM05D004825 ORTHO05D005415 1.7e-22 110.9 90 55.6
Gorai.006G054700 Gossypium raimondii HOM05D004825 ORTHO05D005415 1.7e-22 110.9 90 55.6
Sopen11g007800 Solanum pennellii HOM05D004825 ORTHO05D005415 2.2e-22 110.5 91 57.1
Gohir.A09G053832 Gossypium hirsutum HOM05D004825 ORTHO05D005415 2.9e-22 110.2 90 55.6
Solyc11g018720.1 Solanum lycopersicum HOM05D004825 ORTHO05D005415 4.9e-22 109.4 90 56.7
Lalb_Chr19g0126781 Lupinus albus HOM05D004825 ORTHO05D005415 6.4e-22 109.0 89 55.1
Duzib128G0048 Durio zibethinus HOM05D004825 ORTHO05D005415 8.4e-22 108.6 90 52.2
EL10Ac4g09418 Beta vulgaris HOM05D004825 ORTHO05D005415 1.1e-21 108.2 90 51.1
Sopen11g009760 Solanum pennellii HOM05D004825 ORTHO05D005415 1.1e-21 108.2 90 55.6
SGA_v2.0_scaffold122G33281 Striga asiatica HOM05D004825 ORTHO05D005415 1.1e-21 108.2 90 55.6
Nn3g16227 Nelumbo nucifera HOM05D004825 ORTHO05D005415 1.4e-21 107.8 87 56.3
VMungo1383G1726 Vigna mungo HOM05D004825 ORTHO05D005415 2.4e-21 107.1 90 55.6
GSVIVG01019145001 Vitis vinifera HOM05D004825 ORTHO05D005415 3.2e-21 106.7 90 53.3
FAN14G5305 Fragaria x ananassa HOM05D004825 ORTHO05D005415 4.2e-21 106.3 90 50.0
Medtr7g079500 Medicago truncatula HOM05D004825 ORTHO05D005415 4.2e-21 106.3 89 52.8
RcHm_v2.0_Chr3g0448251 Rosa chinensis HOM05D004825 ORTHO05D005415 4.2e-21 106.3 90 52.2
CiPaw.07G074800 Carya illinoinensis HOM05D004825 ORTHO05D005415 5.4e-21 105.9 90 53.3
Prupe.6G359000 Prunus persica HOM05D004825 ORTHO05D005415 5.4e-21 105.9 90 54.4
Thecc.05G205800 Theobroma cacao HOM05D004825 ORTHO05D005415 5.4e-21 105.9 90 51.1
COL.COLO4_07809 Corchorus olitorius HOM05D004825 ORTHO05D005415 9.3e-21 105.1 91 49.5
PGR119G0192 Punica granatum HOM05D004825 ORTHO05D005415 1.6e-20 104.4 91 51.6
FAN05G3281 Fragaria x ananassa HOM05D004825 ORTHO05D005415 2.1e-20 104.0 90 48.9
CsaV3_2G010380 Cucumis sativus L. HOM05D004825 ORTHO05D005415 2.7e-20 103.6 90 51.1
PSO478G4613 Papaver somniferum HOM05D004825 ORTHO05D005415 2.7e-20 103.6 86 54.7
CAN.G1086.4 Capsicum annuum HOM05D004825 ORTHO05D005415 3.5e-20 103.2 90 52.2
Dinv09864 Davidia involucrata HOM05D004825 ORTHO05D005415 3.5e-20 103.2 90 54.4
DCAR_003341 Daucus carota HOM05D004825 ORTHO05D005415 4.6e-20 102.8 90 52.2
Carub.0005s1010 Capsella rubella HOM05D004825 ORTHO05D005415 6.0e-20 102.4 86 55.8
FAN02G3908 Fragaria x ananassa HOM05D004825 ORTHO05D005415 7.8e-20 102.1 90 47.8
Hma1.2p1_0220F.1_g093020 Hydrangea macrophylla HOM05D004825 ORTHO05D005415 7.8e-20 102.1 90 51.1
Sabra13G0069900 Salix brachista HOM05D004825 ORTHO05D005415 7.8e-20 102.1 90 47.8
Atru.chr12.2135 Acer truncatum HOM05D004825 ORTHO05D005415 1.0e-19 101.7 90 50.0
FAN09G1822 Fragaria x ananassa HOM05D004825 ORTHO05D005415 1.3e-19 101.3 90 46.7
Sed0020944 Sechium edule HOM05D004825 ORTHO05D005415 1.3e-19 101.3 90 48.9
ATR0582G066 Amborella trichopoda HOM05D004825 ORTHO05D005415 1.7e-19 100.9 89 50.6
PSO017G3896 Papaver somniferum HOM05D004825 ORTHO05D005415 1.7e-19 100.9 86 52.3
ClCG11G007440 Citrullus lanatus HOM05D004825 ORTHO05D005415 2.3e-19 100.5 90 50.0
Sp5g16820 Schrenkiella parvula HOM05D004825 ORTHO05D005415 3.0e-19 100.1 85 57.6
TPR.G29414 Trifolium pratense HOM05D004825 ORTHO05D005415 3.0e-19 100.1 87 52.9
MELO3C008585.2 Cucumis melo HOM05D004825 ORTHO05D005415 3.9e-19 99.8 90 50.0
HPP92_007971 Vanilla planifolia HOM05D004825 ORTHO05D005415 6.6e-19 99.0 88 45.5
BcaB01g01166 Brassica carinata HOM05D004825 ORTHO05D005415 8.7e-19 98.6 85 56.5
Thhalv10010266m.g Eutrema salsugineum HOM05D004825 ORTHO05D005415 8.7e-19 98.6 86 54.7
SalBow6G0845 Salvia bowleyana HOM05D004825 ORTHO05D005415 8.7e-19 98.6 88 51.1
MD12G1258500 Malus domestica HOM05D004825 ORTHO05D005415 1.1e-18 98.2 90 52.2
CARHR104500 Cardamine hirsuta HOM05D004825 ORTHO05D005415 2.5e-18 97.1 86 53.5
PGR119G2407 Punica granatum HOM05D004825 ORTHO05D005415 3.3e-18 96.7 90 52.2
Sc06g0005090 Simmondsia chinensis HOM05D004825 ORTHO05D005415 4.3e-18 96.3 89 49.4
THA.LOC104814783 Tarenaya hassleriana HOM05D004825 ORTHO05D005415 4.3e-18 96.3 88 51.1
AT1G65080 Arabidopsis thaliana HOM05D004825 ORTHO05D005415 5.6e-18 95.9 90 48.9
Potri.013G087950 Populus trichocarpa HOM05D004825 ORTHO05D005415 9.6e-18 95.1 89 50.6
BolC3t19174H Brassica oleracea HOM05D004825 ORTHO05D005415 1.6e-17 94.4 85 52.9
Aa31LG2G2270 Aethionema arabicum HOM05D004825 ORTHO05D005415 2.1e-17 94.0 90 47.8
AL2G19720 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 2.8e-17 93.6 90 47.8
Carub.0002s1042 Capsella rubella HOM05D004825 ORTHO05D005415 2.8e-17 93.6 90 47.8
BcaB05g24081 Brassica carinata HOM05D004825 ORTHO05D005415 3.6e-17 93.2 90 46.7
A02p13010 Brassica napus HOM05D004825 ORTHO05D005415 3.6e-17 93.2 90 46.7
A06p22020 Brassica napus HOM05D004825 ORTHO05D005415 3.6e-17 93.2 85 52.9
BraA02t06357Z Brassica rapa HOM05D004825 ORTHO05D005415 3.6e-17 93.2 90 46.7
BraA06t25290Z Brassica rapa HOM05D004825 ORTHO05D005415 3.6e-17 93.2 85 52.9
BcaC01g02045 Brassica carinata HOM05D004825 ORTHO05D005415 4.8e-17 92.8 85 52.9
C03p69210 Brassica napus HOM05D004825 ORTHO05D005415 4.8e-17 92.8 85 52.9
ECA233G4148 Erigeron canadensis HOM05D004825 ORTHO05D005415 1.1e-16 91.7 89 47.2
AL5G22530 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 1.4e-16 91.3 83 50.6
AT3G44370 Arabidopsis thaliana HOM05D004825 ORTHO05D005415 1.4e-16 91.3 83 51.8
BolC2t08253H Brassica oleracea HOM05D004825 ORTHO05D005415 1.8e-16 90.9 90 45.6
Thhalv10022463m.g Eutrema salsugineum HOM05D004825 ORTHO05D005415 1.8e-16 90.9 90 45.6
RcHm_v2.0_Chr3g0448211 Rosa chinensis HOM05D004825 ORTHO05D005415 6.9e-16 89.0 87 48.3
THA.LOC104805710 Tarenaya hassleriana HOM05D004825 ORTHO05D005415 1.2e-15 88.2 91 47.3
C02p21130 Brassica napus HOM05D004825 ORTHO05D005415 1.5e-15 87.8 90 44.4
CDE02G0647 Ceratophyllum demersum HOM05D004825 ORTHO05D005415 3.4e-15 86.7 87 44.8
Lsat_1_v5_gn_8_2080 Lactuca sativa HOM05D004825 ORTHO05D005415 1.3e-14 84.7 90 44.4
HanXRQChr01g0025761 Helianthus annuus HOM05D004825 ORTHO05D005415 3.8e-14 83.2 114 38.6
Potri.009G121800 Populus trichocarpa HOM05D004825 ORTHO05D005415 6.0e-12 75.9 67 50.7
Sp5g19610 Schrenkiella parvula HOM05D004825 ORTHO05D005415 1.0e-11 75.1 90 38.9
SpUn0108_0010 Schrenkiella parvula HOM05D004825 ORTHO05D005415 1.0e-11 75.1 90 38.9
PGSC0003DMG402000916 Solanum tuberosum HOM05D004825 ORTHO05D005415 1.0e-11 75.1 66 54.5
Lj2A408T57 Lonicera japonica HOM05D004825 ORTHO05D005415 1.3e-11 74.7 67 52.2
Manes.09G172300 Manihot esculenta HOM05D004825 ORTHO05D005415 6.7e-11 72.4 58 53.4
Pp3c8_14790 Physcomitrium patens HOM05D004825 ORTHO05D005415 2.5e-10 70.5 87 41.4
Cpa.g.sc18.187 Carica papaya HOM05D004825 ORTHO05D005415 9.6e-10 68.6 58 55.2
Mapoly0072s0017 Marchantia polymorpha HOM05D004825 ORTHO05D005415 1.3e-09 68.2 87 37.9
Psat3g104280 Pisum sativum HOM05D004825 ORTHO05D005415 1.3e-09 68.2 53 58.5
MBI11_g43072_MAGBIO Magnolia biondii HOM05D004825 ORTHO05D005415 3.6e-09 66.6 55 54.5
Zm00001eb375410 Zea mays HOM05D004825 ORTHO05D005415 6.2e-09 65.9 86 34.9
BcaC03g14673 Brassica carinata HOM05D004825 ORTHO05D005415 1.5e-07 61.2 58 46.6
Ca_07962_v3 Cicer arietinum L. HOM05D004825 ORTHO05D005415 2.2e-06 57.4 56 46.4


User provided reference genes

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