Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_026462 Daucus carota HOM05D002231 ORTHO05D006103 2.9e-108 395.2 196 100.0
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 1.5e-51 206.8 193 58.5
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 4.3e-51 205.3 193 58.0
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 5.3e-49 198.4 196 57.7
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 5.3e-49 198.4 196 57.7
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 2.2e-47 193.0 196 58.2
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 8.4e-47 191.0 194 56.2
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 2.4e-46 189.5 193 56.5
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 5.4e-46 188.3 201 54.2
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 2.3e-44 183.0 193 54.4
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 3.0e-44 182.6 198 53.5
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 6.6e-44 181.4 194 54.6
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 8.7e-44 181.0 196 51.5
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 1.1e-43 180.6 193 55.4
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 1.9e-43 179.9 195 52.3
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 2.5e-43 179.5 193 55.4
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 3.3e-43 179.1 195 53.8
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 5.6e-43 178.3 195 54.9
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 9.6e-43 177.6 195 53.3
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 1.3e-42 177.2 194 56.2
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 1.3e-42 177.2 240 48.8
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 2.1e-42 176.4 193 55.4
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 2.8e-42 176.0 196 55.6
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 6.2e-42 174.9 193 53.4
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 1.1e-41 174.1 193 52.8
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 3.1e-41 172.6 196 49.0
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 3.1e-41 172.6 197 52.8
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 4.0e-41 172.2 195 53.3
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 6.9e-41 171.4 193 52.3
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 6.9e-41 171.4 194 52.6
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 2.6e-40 169.5 199 49.7
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 3.4e-40 169.1 199 52.3
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 2.2e-39 166.4 196 51.0
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 3.8e-39 165.6 193 52.8
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 4.9e-39 165.2 193 48.7
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 4.9e-39 165.2 193 53.4
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 4.9e-39 165.2 193 51.3
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 6.4e-39 164.9 202 49.5
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 8.4e-39 164.5 193 52.3
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 1.9e-38 163.3 193 51.8
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 2.4e-38 162.9 197 50.8
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 2.4e-38 162.9 193 50.8
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 3.2e-38 162.5 196 51.0
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 2.1e-37 159.8 193 51.3
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 2.7e-37 159.5 199 48.7
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 2.7e-37 159.5 194 49.5
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 2.7e-37 159.5 193 49.2
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 3.5e-37 159.1 195 48.7
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 4.6e-37 158.7 193 50.3
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 4.6e-37 158.7 197 51.3
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 4.6e-37 158.7 184 51.6
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 6.0e-37 158.3 192 52.1
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 1.0e-36 157.5 193 48.7
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 1.3e-36 157.1 194 49.0
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 2.3e-36 156.4 193 52.3
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 2.3e-36 156.4 200 52.5
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 5.1e-36 155.2 193 52.8
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 5.1e-36 155.2 197 49.7
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 6.7e-36 154.8 201 49.3
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 8.7e-36 154.5 133 62.4
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.1e-35 154.1 199 49.2
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 1.1e-35 154.1 148 58.8
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 1.9e-35 153.3 128 63.3
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 3.3e-35 152.5 203 49.8
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 3.3e-35 152.5 193 50.3
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 7.4e-35 151.4 196 50.5
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 7.4e-35 151.4 193 48.2
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 7.4e-35 151.4 196 50.0
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 9.6e-35 151.0 191 50.3
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 1.3e-34 150.6 193 50.3
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 1.6e-34 150.2 128 62.5
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 2.1e-34 149.8 193 47.2
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 2.8e-34 149.4 138 60.1
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 3.7e-34 149.1 195 50.3
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 8.1e-34 147.9 128 61.7
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 1.4e-33 147.1 202 46.0
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 4.0e-33 145.6 195 49.7
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 6.9e-33 144.8 143 58.0
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 6.9e-33 144.8 143 58.0
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 6.9e-33 144.8 195 49.7
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 6.9e-33 144.8 142 57.0
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 9.0e-33 144.4 189 51.9
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 9.0e-33 144.4 197 48.2
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 9.0e-33 144.4 195 49.2
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 1.2e-32 144.1 200 46.5
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 2.0e-32 143.3 197 48.2
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 2.0e-32 143.3 133 57.9
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 2.0e-32 143.3 143 57.3
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 2.6e-32 142.9 194 44.3
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 2.6e-32 142.9 185 49.2
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 4.5e-32 142.1 186 49.5
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 5.8e-32 141.7 144 56.2
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 5.8e-32 141.7 202 46.0
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 7.6e-32 141.4 193 46.1
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 1.7e-31 140.2 196 45.9
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 2.2e-31 139.8 177 49.2
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 2.2e-31 139.8 191 49.2
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 2.2e-31 139.8 193 45.1
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 3.8e-31 139.0 200 46.5
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 6.4e-31 138.3 194 45.9
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 1.4e-30 137.1 111 64.0
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 1.9e-30 136.7 193 45.1
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 2.5e-30 136.3 193 44.0
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 3.2e-30 136.0 193 44.6
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 5.5e-30 135.2 106 66.0
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 1.2e-29 134.0 198 43.4
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 1.6e-29 133.7 195 43.1
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 2.1e-29 133.3 195 42.6
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 2.1e-29 133.3 193 44.0
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 2.1e-29 133.3 195 42.6
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 3.5e-29 132.5 193 44.0
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 3.5e-29 132.5 193 44.0
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 3.0e-28 129.4 193 43.5
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 3.9e-28 129.0 194 43.3
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 3.9e-28 129.0 193 43.5
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 6.7e-28 128.3 194 42.8
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 6.7e-28 128.3 194 42.3
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 8.7e-28 127.9 202 41.1
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 8.7e-28 127.9 194 42.8
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 2.5e-27 126.3 109 62.4
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 4.3e-27 125.6 113 57.5
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 5.6e-27 125.2 73 80.8
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 5.6e-27 125.2 194 43.8
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 3.7e-26 122.5 75 74.7
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 3.7e-26 122.5 194 38.7
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 1.1e-25 120.9 146 50.0
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 2.4e-25 119.8 159 45.9
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 3.4e-24 115.9 193 46.1
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 5.8e-24 115.2 75 74.7
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 7.6e-24 114.8 124 51.6
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 2.2e-23 113.2 106 55.7
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.1e-22 110.9 180 43.9
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 7.1e-22 108.2 179 37.4
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 7.1e-22 108.2 124 47.6
Lsat_1_v5_gn_4_56001 Lactuca sativa HOM05D002231 ORTHO05D006103 3.5e-21 105.9 126 43.7
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 6.0e-21 105.1 112 48.2
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 3.9e-20 102.4 110 50.0
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 1.1e-19 100.9 78 59.0
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 1.3e-18 97.4 76 60.5
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 3.7e-18 95.9 92 52.2
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 1.1e-17 94.4 109 50.5
TAR383G1026 Trochodendron aralioides HOM05D002231 ORTHO05D006103 4.5e-16 89.0 90 57.8
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 1.0e-15 87.8 108 44.4
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 3.6e-13 79.3 56 67.9
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 7.9e-13 78.2 47 72.3
CDE05G2241 Ceratophyllum demersum HOM05D001859 ORTHO05D001836 1.1e-09 67.8 40 80.0
Cpa.g.sc43.61 Carica papaya HOM05D002231 ORTHO05D006103 9.1e-09 64.7 104 44.2
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 5.9e-08 62.0 69 46.4
TAR636G2964 Trochodendron aralioides HOM05D002231 ORTHO05D006103 1.0e-07 61.2 75 45.3
C02p58440 Brassica napus HOM05D001393 ORTHO05D032808 2.9e-07 59.7 36 69.4


User provided reference genes

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