Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 0.0e+00 1783.8 1020 100.0
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1114.8 1034 62.6
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1111.7 1034 62.6
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 2.2e-308 1062.4 1022 62.3
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 2.1e-303 1045.8 1071 58.3
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 5.1e-297 1024.6 1065 58.9
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 1.6e-295 1019.6 1071 60.0
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 1.4e-294 1016.5 1035 57.4
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 1.5e-293 1013.1 1047 58.5
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 2.0e-293 1012.7 1037 59.0
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 2.0e-293 1012.7 1032 56.3
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 8.5e-292 1007.3 1030 56.3
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 3.2e-291 1005.4 1039 56.9
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 4.6e-290 1001.5 1070 57.6
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 1.0e-289 1000.3 1025 59.2
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 5.1e-289 998.0 1051 58.0
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 1.5e-288 996.5 1023 58.0
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 3.3e-288 995.3 1023 58.5
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 4.3e-288 995.0 1090 58.0
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 2.4e-286 989.2 1035 56.8
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 5.3e-286 988.0 1059 60.4
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 5.3e-286 988.0 1024 57.2
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 1.2e-285 986.9 1056 58.0
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 2.0e-285 986.1 1052 59.1
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 5.9e-285 984.6 1039 61.0
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 1.7e-284 983.0 1005 59.3
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 1.1e-283 980.3 1057 57.6
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 2.3e-281 972.6 1037 57.9
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 3.0e-281 972.2 1041 56.5
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 1.1e-280 970.3 1025 57.3
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 3.3e-280 968.8 1092 56.4
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 5.7e-280 968.0 1037 57.1
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 7.4e-280 967.6 1070 55.0
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 2.2e-279 966.1 1026 55.6
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.8e-279 965.7 930 59.8
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 1.4e-278 963.4 1069 54.7
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.8e-278 963.0 1024 59.1
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 7.0e-278 961.1 1056 55.3
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 9.1e-278 960.7 979 58.7
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 9.1e-278 960.7 1019 57.7
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 2.0e-277 959.5 1035 58.6
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 2.2e-276 956.1 1037 55.5
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 2.9e-276 955.7 1085 55.2
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 6.5e-276 954.5 1047 55.9
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 1.9e-275 953.0 1057 56.6
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 3.2e-275 952.2 1090 56.8
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.6e-274 949.9 1019 58.3
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 3.6e-274 948.7 1018 58.3
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 1.5e-272 943.3 1045 57.3
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 1.5e-272 943.3 860 60.1
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 2.6e-272 942.6 898 58.8
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 2.2e-271 939.5 1059 55.1
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 2.8e-271 939.1 972 57.5
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 4.8e-271 938.3 1018 58.7
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 5.3e-270 934.9 1073 55.1
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 1.2e-269 933.7 1096 53.1
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 2.2e-268 929.5 1056 53.8
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 2.9e-268 929.1 1051 54.5
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 1.6e-266 923.3 1061 55.9
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 4.7e-266 921.8 1017 55.5
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 6.1e-266 921.4 1168 50.4
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 1.4e-265 920.2 1065 54.6
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 4.4e-264 915.2 1053 52.7
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 2.2e-263 912.9 1060 53.2
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 1.4e-262 910.2 1095 52.1
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 1.8e-262 909.8 878 61.0
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 2.0e-261 906.4 1030 54.5
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 2.0e-261 906.4 1006 54.8
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.1e-259 900.6 1078 55.0
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 1.9e-259 899.8 1062 53.7
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.2e-259 899.0 1019 56.1
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 9.8e-256 887.5 999 53.5
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 1.3e-255 887.1 896 62.1
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 6.3e-255 884.8 1048 53.6
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 2.0e-253 879.8 1049 54.2
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 1.7e-252 876.7 1050 53.0
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 1.9e-251 873.2 884 57.0
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 1.8e-246 856.7 1040 52.6
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 9.2e-246 854.4 906 54.9
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 1.0e-244 850.9 935 56.1
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 1.2e-242 844.0 1025 51.5
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 1.6e-242 843.6 1067 50.9
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 1.4e-241 840.5 1032 52.0
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 6.8e-241 838.2 960 52.1
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 3.4e-240 835.9 1068 49.0
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 7.5e-240 834.7 1077 48.7
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.3e-239 833.9 1043 50.7
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 8.3e-239 831.2 954 54.2
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 3.2e-238 829.3 862 54.6
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 4.6e-237 825.5 869 56.3
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 5.0e-236 822.0 1046 50.4
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 2.4e-230 803.1 970 51.0
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 2.1e-226 790.0 948 50.9
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.1e-226 790.0 830 56.1
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 2.3e-225 786.6 1068 50.5
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 9.9e-224 781.2 1033 52.0
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 2.4e-217 760.0 889 50.5
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 2.0e-216 756.9 1018 46.1
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 1.9e-211 740.3 1003 51.8
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 5.8e-208 728.8 1066 45.6
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.2e-205 721.1 645 63.6
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.3e-202 711.1 717 60.9
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 3.7e-186 656.4 607 61.4
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 1.1e-179 634.8 995 44.6
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.7e-173 613.6 617 58.0
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 1.5e-171 607.8 804 44.5
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 1.8e-169 600.9 807 44.7
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 5.2e-156 556.2 727 44.8
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 6.7e-156 555.8 577 56.5
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 7.0e-153 545.8 517 61.1
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 4.7e-149 533.1 724 48.6
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.4e-148 531.6 625 49.4
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 8.5e-143 512.3 907 39.0
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 2.7e-141 507.3 571 53.4
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 4.0e-140 503.4 931 37.4
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 1.2e-131 475.3 362 70.4
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 3.5e-120 437.2 876 36.3
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 1.2e-88 332.4 906 32.7
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.6e-80 305.4 288 60.8
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 1.3e-77 295.8 608 38.5
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 6.2e-77 293.5 345 50.7
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 2.5e-70 271.6 203 72.4
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 4.5e-67 260.8 580 40.7
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 8.5e-66 256.5 630 33.5
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 2.1e-56 225.3 741 27.8
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 4.4e-54 217.6 230 60.0
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 4.1e-52 211.1 159 71.7
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 1.2e-51 209.5 193 73.1
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 6.7e-47 193.7 213 53.1
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 2.9e-34 151.8 159 57.9
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 1.9e-33 149.1 150 58.0
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 1.0e-31 143.3 199 59.3
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 7.7e-27 127.1 122 59.8
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 2.8e-24 118.6 183 53.6
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 5.9e-19 100.9 135 48.9
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 5.0e-18 97.8 79 57.0
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 1.1e-17 96.7 58 75.9
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 2.5e-17 95.5 195 43.6
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 5.6e-17 94.4 66 69.7
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 1.6e-16 92.8 51 84.3
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 6.2e-08 64.3 99 70.7
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 1.8e-07 62.8 45 62.2
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 1.8e-07 62.8 45 62.2
Sc16g0005200 Simmondsia chinensis HOM05D005068 ORTHO05D019833 2.3e-07 62.4 121 36.4
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 3.1e-07 62.0 45 62.2
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 3.1e-07 62.0 45 62.2
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 6.8e-07 60.8 45 60.0


User provided reference genes

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