Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 8.0e-226 786.9 452 100.0
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 5.0e-119 432.2 401 55.1
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 1.8e-113 413.7 401 52.6
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 4.5e-112 409.1 406 53.2
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 1.0e-111 407.9 354 57.6
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 1.9e-110 403.7 393 53.2
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 4.7e-109 399.1 393 52.7
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 6.1e-109 398.7 396 51.8
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 8.0e-109 398.3 388 53.4
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 8.8e-108 394.8 399 51.6
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 8.8e-108 394.8 399 51.6
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 4.4e-107 392.5 397 50.9
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 5.7e-107 392.1 399 50.6
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 1.3e-106 391.0 399 49.6
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 1.3e-106 391.0 399 51.1
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 2.2e-106 390.2 400 50.0
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 8.2e-106 388.3 399 50.9
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 1.4e-105 387.5 395 50.9
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 1.6e-104 384.0 401 48.6
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 2.0e-104 383.6 399 48.9
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 3.5e-104 382.9 399 51.4
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 4.5e-104 382.5 393 51.4
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 5.9e-104 382.1 405 48.9
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.0e-103 381.3 397 50.4
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 5.0e-103 379.0 400 48.5
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 1.6e-101 374.0 411 48.9
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 2.1e-101 373.6 395 48.1
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 1.2e-99 367.9 395 47.3
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 1.5e-99 367.5 398 48.5
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 2.0e-99 367.1 400 47.5
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 4.4e-99 365.9 409 46.9
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 1.7e-98 364.0 401 49.9
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 1.7e-98 364.0 417 45.6
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 4.8e-98 362.5 400 47.2
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 6.3e-98 362.1 398 47.7
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 1.4e-97 360.9 412 46.8
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 4.1e-97 359.4 398 47.2
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 1.6e-96 357.5 402 46.3
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 2.7e-96 356.7 398 47.2
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 3.5e-96 356.3 402 47.8
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 7.7e-96 355.1 414 45.9
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 1.0e-95 354.8 417 46.3
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 6.6e-95 352.1 425 45.2
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 1.9e-94 350.5 398 46.2
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 3.3e-94 349.7 399 48.6
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 4.7e-93 345.9 410 45.9
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 1.8e-92 344.0 413 45.5
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 2.3e-92 343.6 410 45.6
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 3.0e-92 343.2 399 46.9
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 4.0e-92 342.8 401 46.9
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 6.8e-92 342.0 397 46.3
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.5e-91 340.9 404 44.6
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 7.5e-91 338.6 398 45.2
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 1.3e-90 337.8 399 47.6
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 6.3e-90 335.5 432 42.6
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 6.3e-90 335.5 402 45.8
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 8.3e-90 335.1 400 43.8
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 8.3e-90 335.1 390 48.2
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 1.1e-89 334.7 316 52.8
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 2.4e-89 333.6 378 47.1
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 2.4e-89 333.6 421 41.8
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.4e-89 332.4 402 45.3
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 7.0e-89 332.0 402 45.5
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 4.5e-88 329.3 402 45.0
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 5.9e-88 328.9 403 42.9
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 7.8e-88 328.6 404 44.1
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 8.6e-87 325.1 399 44.1
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 3.3e-86 323.2 395 45.8
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 1.2e-85 321.2 398 45.2
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 1.2e-85 321.2 407 44.5
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 3.6e-85 319.7 407 44.2
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 4.7e-85 319.3 432 40.5
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 1.4e-84 317.8 470 40.6
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 5.2e-84 315.8 402 41.8
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 6.8e-84 315.5 438 41.8
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 8.9e-84 315.1 407 42.8
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 1.5e-83 314.3 386 45.6
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 7.5e-83 312.0 398 42.7
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 9.8e-83 311.6 400 41.8
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.1e-81 308.1 401 43.4
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.9e-81 307.4 403 43.4
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 7.0e-81 305.4 404 41.3
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 9.2e-81 305.1 417 41.0
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 2.0e-80 303.9 398 43.7
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 2.0e-80 303.9 398 43.7
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 2.0e-80 303.9 398 43.7
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 1.7e-79 300.8 398 42.7
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 5.0e-79 299.3 398 43.5
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 8.6e-79 298.5 398 43.2
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.5e-78 297.7 396 41.7
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 1.5e-78 297.7 349 45.0
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 4.3e-78 296.2 403 42.4
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 5.6e-78 295.8 403 40.7
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 5.6e-78 295.8 395 40.8
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 7.3e-78 295.4 403 40.9
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 6.2e-77 292.4 402 43.0
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 1.1e-76 291.6 405 41.0
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 1.1e-76 291.6 384 43.5
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 1.4e-76 291.2 397 40.6
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 5.2e-76 289.3 402 41.3
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 4.4e-75 286.2 398 39.9
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 5.8e-75 285.8 409 41.1
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 2.2e-74 283.9 395 40.0
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 6.4e-74 282.3 396 39.6
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 5.4e-73 279.3 396 40.2
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 2.1e-72 277.3 398 41.5
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 3.5e-72 276.6 422 38.4
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 2.1e-69 267.3 605 29.3
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 1.1e-68 265.0 397 38.3
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 1.6e-64 251.1 400 39.0
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 1.3e-63 248.1 406 41.4
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 4.3e-62 243.0 397 37.5
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 1.5e-59 234.6 314 40.8
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 3.4e-59 233.4 438 35.8
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.9e-58 230.3 393 36.9
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 1.4e-52 211.5 373 36.7
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 1.4e-52 211.5 393 34.4
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 5.4e-49 199.5 395 33.7
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 2.7e-48 197.2 300 37.7
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 1.9e-46 191.0 283 41.7
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 1.6e-45 188.0 458 30.8
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 6.9e-44 182.6 246 41.5
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 7.6e-43 179.1 445 32.4
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 9.9e-43 178.7 238 42.9
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 8.4e-42 175.6 218 41.3
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 9.3e-41 172.2 307 36.5
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 7.4e-38 162.5 197 41.6
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.0e-36 156.8 375 31.2
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 3.2e-33 147.1 228 37.7
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.0e-31 142.1 303 32.7
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.1e-30 138.7 138 48.6
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 4.8e-29 133.3 304 31.2
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 5.5e-25 119.8 397 27.5
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 2.7e-24 117.5 109 54.1
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.8e-23 114.8 398 26.6
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.5e-22 110.9 397 25.2
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 9.7e-22 109.0 153 43.1
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 8.2e-21 105.9 157 40.1
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.4e-20 104.4 248 29.4
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 1.2e-19 102.1 328 27.7
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 1.7e-18 98.2 238 32.8
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 2.9e-18 97.4 108 47.2
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 6.5e-18 96.3 91 54.9
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 2.1e-16 91.3 156 34.0
Oeu027301.1 Olea europaea HOM05D004436 ORTHO05D005179 6.1e-16 89.7 151 37.7
DCAR_010861 Daucus carota HOM05D002083 ORTHO05D000332 2.0e-14 84.7 121 49.6
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 4.3e-14 83.6 139 34.5
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.8e-12 78.2 125 36.8
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 4.1e-12 77.0 113 37.2
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 2.0e-11 74.7 91 42.9
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 5.9e-11 73.2 200 28.0
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 1.4e-09 68.6 79 48.1
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.9e-09 68.2 122 32.8
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 3.2e-09 67.4 129 34.1
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 3.2e-09 67.4 129 34.1
DCAR_005655 Daucus carota HOM05D004436 ORTHO05D005179 1.4e-07 62.0 36 83.3
DCAR_003177 Daucus carota HOM05D000611 ORTHO05D004334 3.0e-07 60.8 141 36.9
PSO017G0055 Papaver somniferum HOM05D004436 ORTHO05D005179 1.5e-06 58.5 121 32.2


User provided reference genes

Program Settings