Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 2.0e-45 185.7 114 100.0
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 3.8e-15 85.1 80 77.5
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 3.8e-15 85.1 48 81.2
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.4e-14 83.2 79 69.6
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 7.1e-14 80.9 80 75.0
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 1.2e-13 80.1 78 74.4
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 1.6e-13 79.7 77 75.3
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 2.7e-13 79.0 49 75.5
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 3.5e-13 78.6 79 69.6
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 3.5e-13 78.6 78 73.1
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 3.5e-13 78.6 77 74.0
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 4.6e-13 78.2 81 65.4
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 7.9e-13 77.4 48 75.0
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 7.9e-13 77.4 46 78.3
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.3e-12 76.6 79 68.4
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.3e-12 76.6 79 68.4
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 1.3e-12 76.6 78 67.9
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 1.8e-12 76.3 77 71.4
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 2.3e-12 75.9 79 69.6
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 3.0e-12 75.5 81 66.7
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 3.0e-12 75.5 78 71.8
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 3.0e-12 75.5 79 69.6
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 3.9e-12 75.1 47 76.6
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 3.9e-12 75.1 78 70.5
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 5.1e-12 74.7 77 71.4
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 5.1e-12 74.7 75 70.7
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 6.7e-12 74.3 51 62.7
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 6.7e-12 74.3 78 73.1
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 6.7e-12 74.3 79 69.6
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 6.7e-12 74.3 78 70.5
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 6.7e-12 74.3 77 71.4
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 6.7e-12 74.3 77 71.4
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 6.7e-12 74.3 48 70.8
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 6.7e-12 74.3 46 73.9
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 8.7e-12 73.9 77 75.3
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 8.7e-12 73.9 78 67.9
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 2.5e-11 72.4 47 72.3
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 3.3e-11 72.0 48 66.7
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 4.3e-11 71.6 47 72.3
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 4.3e-11 71.6 46 69.6
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 5.6e-11 71.2 76 75.0
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 5.6e-11 71.2 81 70.4
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 5.6e-11 71.2 77 71.4
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 7.4e-11 70.9 47 68.1
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 9.6e-11 70.5 77 67.5
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 9.6e-11 70.5 47 72.3
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 9.6e-11 70.5 77 66.2
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 9.6e-11 70.5 77 72.7
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 1.3e-10 70.1 76 71.1
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 1.3e-10 70.1 49 69.4
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 1.3e-10 70.1 47 70.2
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.6e-10 69.7 78 69.2
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 1.6e-10 69.7 79 70.9
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 2.1e-10 69.3 75 70.7
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 2.1e-10 69.3 80 71.2
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 2.1e-10 69.3 45 73.3
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 2.8e-10 68.9 50 66.0
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 2.8e-10 68.9 82 57.3
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 2.8e-10 68.9 82 65.9
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 2.8e-10 68.9 82 57.3
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 2.8e-10 68.9 76 72.4
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 2.8e-10 68.9 48 66.7
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 3.6e-10 68.6 79 51.9
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 4.8e-10 68.2 52 63.5
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 4.8e-10 68.2 47 70.2
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 4.8e-10 68.2 80 47.5
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 6.2e-10 67.8 77 68.8
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 6.2e-10 67.8 52 61.5
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 8.1e-10 67.4 79 63.3
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.1e-09 67.0 78 65.4
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 1.1e-09 67.0 45 64.4
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 1.4e-09 66.6 52 61.5
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 1.8e-09 66.2 51 64.7
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 2.4e-09 65.9 79 45.6
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.4e-09 65.9 47 70.2
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 2.4e-09 65.9 78 69.2
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 2.4e-09 65.9 56 60.7
PGSC0003DMG400004852 Solanum tuberosum HOM05D003238 ORTHO05D003571 2.4e-09 65.9 37 81.1
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 2.4e-09 65.9 46 65.2
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 3.1e-09 65.5 80 57.5
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 3.1e-09 65.5 78 67.9
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.1e-09 65.5 78 67.9
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.1e-09 65.5 78 67.9
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 3.1e-09 65.5 77 68.8
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 4.0e-09 65.1 79 68.4
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 4.0e-09 65.1 48 62.5
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 5.3e-09 64.7 44 68.2
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 5.3e-09 64.7 46 67.4
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 6.9e-09 64.3 78 69.2
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 6.9e-09 64.3 79 70.9
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 9.0e-09 63.9 51 58.8
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 1.2e-08 63.5 50 64.0
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 1.2e-08 63.5 93 54.8
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.2e-08 63.5 52 63.5
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 1.5e-08 63.2 82 42.7
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 1.5e-08 63.2 49 61.2
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 1.5e-08 63.2 49 67.3
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 2.0e-08 62.8 78 65.4
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 2.0e-08 62.8 78 66.7
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 2.6e-08 62.4 52 57.7
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 2.6e-08 62.4 83 41.0
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 2.6e-08 62.4 51 60.8
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 2.6e-08 62.4 78 44.9
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 2.6e-08 62.4 46 65.2
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 3.4e-08 62.0 42 66.7
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 3.4e-08 62.0 79 43.0
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 7.6e-08 60.8 78 46.2
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 9.9e-08 60.5 120 35.0
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 9.9e-08 60.5 121 44.6
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 9.9e-08 60.5 78 57.7
EL10Ac7g16367 Beta vulgaris HOM05D003238 ORTHO05D003571 1.3e-07 60.1 49 63.3
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.3e-07 60.1 47 63.8
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 1.3e-07 60.1 76 64.5
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 1.7e-07 59.7 44 63.6
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 1.7e-07 59.7 49 59.2
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 2.2e-07 59.3 56 57.1
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 2.2e-07 59.3 64 53.1
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 2.2e-07 59.3 50 56.0
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 3.8e-07 58.5 76 38.2
ECA247G2422 Erigeron canadensis HOM05D003238 ORTHO05D003571 4.9e-07 58.2 78 64.1
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 6.4e-07 57.8 104 41.3
Nitab4.5_0000415g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 8.4e-07 57.4 41 65.9
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 1.1e-06 57.0 128 32.8
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 1.4e-06 56.6 77 42.9
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 1.9e-06 56.2 49 59.2
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 1.9e-06 56.2 82 57.3
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 1.9e-06 56.2 52 55.8
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 1.9e-06 56.2 47 53.2
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 1.9e-06 56.2 49 51.0
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 1.9e-06 56.2 132 34.8
CDE05G2517 Ceratophyllum demersum HOM05D003238 ORTHO05D003571 2.4e-06 55.8 50 54.0
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 3.2e-06 55.5 124 33.1
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 3.2e-06 55.5 64 45.3
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 4.2e-06 55.1 45 62.2
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 4.2e-06 55.1 85 41.2
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 4.2e-06 55.1 113 35.4
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 5.5e-06 54.7 126 32.5
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 5.5e-06 54.7 126 32.5
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 9.3e-06 53.9 46 58.7
Gorai.001G012800 Gossypium raimondii HOM05D003238 ORTHO05D003571 9.3e-06 53.9 46 58.7


User provided reference genes

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