Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 9.6e-250 866.3 422 100.0
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 2.1e-148 529.6 389 68.1
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 1.4e-147 526.9 399 66.7
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 3.4e-146 522.3 391 67.0
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 6.4e-145 518.1 387 66.9
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.9e-144 516.5 387 68.5
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 7.1e-144 514.6 389 65.8
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 2.1e-143 513.1 387 65.6
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 2.3e-142 509.6 389 65.6
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 6.7e-142 508.1 387 64.9
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 1.9e-141 506.5 387 65.9
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 3.3e-141 505.8 387 65.4
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 7.4e-141 504.6 387 64.3
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 2.1e-140 503.1 387 64.9
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 2.8e-140 502.7 396 64.9
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 2.8e-140 502.7 387 64.9
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 6.2e-140 501.5 389 64.8
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 1.1e-139 500.7 422 62.3
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.4e-139 500.4 414 63.0
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 1.8e-139 500.0 389 64.5
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 2.4e-139 499.6 389 65.3
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 3.1e-139 499.2 389 64.5
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 5.3e-139 498.4 387 64.3
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 9.0e-139 497.7 389 64.5
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 1.2e-138 497.3 387 63.8
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 1.5e-138 496.9 387 63.6
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 5.8e-138 495.0 387 64.9
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 1.0e-137 494.2 389 63.8
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 1.0e-137 494.2 389 63.5
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 1.3e-137 493.8 387 63.0
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 1.3e-137 493.8 387 63.6
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 1.7e-137 493.4 387 64.1
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 1.7e-137 493.4 387 64.6
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 2.2e-137 493.0 389 63.8
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 2.9e-137 492.7 389 65.0
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 6.5e-137 491.5 387 62.8
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 6.5e-137 491.5 387 63.3
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 1.1e-136 490.7 394 63.7
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 2.5e-136 489.6 389 63.5
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 3.2e-136 489.2 387 62.3
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 4.2e-136 488.8 389 63.2
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 4.2e-136 488.8 387 62.3
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 4.2e-136 488.8 382 65.7
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 4.6e-135 485.3 399 62.2
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 3.0e-134 482.6 387 63.0
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 3.0e-134 482.6 387 63.0
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 3.9e-134 482.3 389 62.7
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 1.5e-133 480.3 392 61.7
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.5e-133 480.3 387 62.5
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 3.3e-133 479.2 387 62.3
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 4.3e-133 478.8 387 62.8
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.3e-132 477.2 391 61.9
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 1.6e-132 476.9 387 62.3
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 2.2e-132 476.5 390 60.3
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 4.8e-132 475.3 407 58.5
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 1.1e-131 474.2 387 62.3
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 1.1e-131 474.2 389 60.4
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 1.4e-131 473.8 372 63.4
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 2.4e-131 473.0 389 61.2
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 2.4e-131 473.0 389 60.7
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 3.1e-131 472.6 405 58.3
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 3.1e-131 472.6 387 60.7
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 1.2e-130 470.7 387 60.7
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 3.4e-130 469.2 387 61.8
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 1.0e-129 467.6 389 59.6
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 4.2e-128 462.2 391 59.1
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.2e-127 460.7 387 61.2
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 1.6e-127 460.3 389 59.4
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 1.6e-127 460.3 389 58.6
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 5.7e-125 451.8 370 61.1
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 7.4e-125 451.4 387 59.7
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 4.1e-123 445.7 389 59.1
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 1.2e-119 434.1 366 60.7
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 4.7e-119 432.2 389 58.1
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 3.3e-117 426.0 386 59.1
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 5.7e-117 425.2 329 63.8
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 2.2e-116 423.3 282 70.2
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 2.8e-116 422.9 298 68.1
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.2e-114 417.5 358 62.6
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 2.0e-114 416.8 368 59.0
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.2e-113 413.3 358 62.0
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 6.7e-110 401.7 350 59.7
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 1.3e-108 397.5 394 53.6
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 5.9e-106 388.7 304 62.5
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 3.8e-105 386.0 389 51.2
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 7.2e-104 381.7 601 39.6
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 2.0e-101 373.6 389 52.4
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 5.0e-97 359.0 390 50.5
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 1.4e-94 350.9 403 49.6
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 1.8e-91 340.5 467 44.8
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 4.5e-90 335.9 301 57.5
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 2.9e-89 333.2 267 63.3
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 6.6e-89 332.0 270 63.0
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 2.1e-87 327.0 346 51.2
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 4.0e-86 322.8 227 67.0
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 1.2e-85 321.2 392 48.2
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 6.3e-84 315.5 264 60.2
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 8.3e-84 315.1 264 59.8
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 8.3e-84 315.1 389 46.0
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 4.1e-83 312.8 282 55.0
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 9.2e-83 311.6 264 60.2
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 3.3e-80 303.1 362 49.2
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 1.4e-78 297.7 267 57.7
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 3.7e-76 289.7 392 44.1
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 6.4e-76 288.9 314 47.8
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 1.6e-71 274.2 269 52.0
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 7.5e-69 265.4 221 62.0
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 9.8e-69 265.0 219 61.2
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 1.7e-68 264.2 388 42.0
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 4.7e-63 246.1 387 40.8
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 6.8e-62 242.3 255 47.8
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 1.3e-52 211.5 387 38.2
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 2.7e-50 203.8 311 38.9
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 2.7e-50 203.8 370 38.1
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 2.4e-46 190.7 387 36.4
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 4.0e-46 189.9 135 68.1
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 1.2e-45 188.3 154 59.1
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 2.4e-43 180.6 117 69.2
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 2.5e-40 170.6 94 83.0
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 4.3e-40 169.9 157 57.3
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 4.3e-40 169.9 157 57.3
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 7.3e-40 169.1 148 58.8
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 1.9e-35 154.5 182 42.3
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 2.1e-34 151.0 89 75.3
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 3.3e-32 143.7 92 66.3
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 4.3e-32 143.3 92 70.7
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 5.6e-32 142.9 116 62.9
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 1.3e-31 141.7 92 68.5
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 9.0e-30 135.6 93 72.0
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 2.3e-25 120.9 89 58.4
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 8.7e-17 92.4 60 65.0
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 2.0e-13 81.3 59 61.0
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 7.7e-13 79.3 48 66.7
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.7e-12 78.2 44 79.5
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 2.2e-12 77.8 45 77.8
CAN.G1725.1 Capsicum annuum HOM05D005203 ORTHO05D006383 1.4e-09 68.6 46 71.7
PGSC0003DMG401014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 1.1e-08 65.5 46 67.4
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 3.3e-08 63.9 62 54.8
GSVIVG01002825001 Vitis vinifera HOM05D005203 ORTHO05D006383 2.2e-07 61.2 46 71.7


User provided reference genes

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