Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 1.8e-119 432.6 216 100.0
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 2.5e-60 236.1 204 58.3
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 1.4e-58 230.3 186 61.8
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 1.3e-56 223.8 203 60.1
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 5.4e-55 218.4 168 63.7
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 1.0e-53 214.2 213 56.3
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 1.7e-53 213.4 175 62.9
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 5.1e-53 211.8 169 61.5
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 5.1e-53 211.8 182 56.0
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 1.2e-51 207.2 184 56.0
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 6.8e-50 201.4 233 51.1
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 2.6e-49 199.5 196 53.6
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 4.4e-49 198.7 217 50.2
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 4.4e-49 198.7 177 54.2
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 5.8e-49 198.4 210 49.0
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 5.8e-49 198.4 191 53.4
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 7.6e-49 198.0 179 56.4
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 7.6e-49 198.0 193 51.3
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 9.9e-49 197.6 183 53.6
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 1.3e-48 197.2 220 47.7
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 1.3e-48 197.2 198 54.5
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 2.2e-48 196.4 199 50.8
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 2.9e-48 196.1 213 51.2
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 2.9e-48 196.1 178 57.3
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 3.8e-48 195.7 204 51.5
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 3.8e-48 195.7 179 53.1
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 3.8e-48 195.7 224 50.9
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 8.4e-48 194.5 201 50.7
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 1.4e-47 193.7 180 56.1
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 1.9e-47 193.4 185 54.6
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 2.4e-47 193.0 155 63.2
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 2.4e-47 193.0 230 47.8
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 2.4e-47 193.0 200 50.5
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 3.2e-47 192.6 180 52.2
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 4.1e-47 192.2 198 53.0
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 4.1e-47 192.2 179 54.7
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 5.4e-47 191.8 175 53.7
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 7.1e-47 191.4 198 51.5
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 9.2e-47 191.0 189 52.4
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.2e-46 190.7 215 50.2
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 1.2e-46 190.7 215 50.2
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 2.7e-46 189.5 216 49.1
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 2.7e-46 189.5 184 53.3
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 6.0e-46 188.3 179 53.6
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 6.0e-46 188.3 207 50.2
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 7.8e-46 188.0 184 52.7
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 1.0e-45 187.6 183 52.5
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.3e-45 187.2 215 49.8
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 1.3e-45 187.2 226 47.3
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 3.9e-45 185.7 214 48.6
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 3.9e-45 185.7 203 50.2
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 3.9e-45 185.7 237 46.8
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 8.6e-45 184.5 216 47.7
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 1.5e-44 183.7 180 52.2
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 1.5e-44 183.7 173 53.2
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 1.6e-43 180.3 217 48.8
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 3.6e-43 179.1 173 52.0
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 1.8e-42 176.8 204 49.5
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 5.2e-42 175.3 188 50.0
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 6.9e-42 174.9 204 49.0
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 2.0e-41 173.3 171 52.0
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 2.0e-41 173.3 206 46.6
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 2.6e-41 172.9 177 50.3
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 1.3e-40 170.6 180 47.8
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 1.7e-40 170.2 177 49.2
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 2.2e-40 169.9 180 48.3
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.2e-40 169.9 192 47.4
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 2.9e-40 169.5 192 47.9
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 2.9e-40 169.5 206 46.1
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 4.9e-40 168.7 198 45.5
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 6.4e-40 168.3 194 45.4
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 6.4e-40 168.3 214 43.9
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 1.4e-39 167.2 186 47.3
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 1.4e-39 167.2 184 47.8
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 3.2e-39 166.0 199 47.7
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 3.2e-39 166.0 188 50.0
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 5.4e-39 165.2 187 47.1
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 7.1e-39 164.9 195 43.6
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 7.1e-39 164.9 185 47.0
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 1.6e-38 163.7 196 43.9
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 1.6e-38 163.7 193 46.6
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 2.7e-38 162.9 172 50.6
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 3.5e-38 162.5 196 47.4
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 6.0e-38 161.8 171 49.1
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 6.0e-38 161.8 231 44.2
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 7.8e-38 161.4 176 47.7
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 1.3e-37 160.6 193 47.2
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 1.7e-37 160.2 174 46.6
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 2.3e-37 159.8 186 44.1
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 3.0e-37 159.5 171 50.3
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 5.1e-37 158.7 206 42.2
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 5.1e-37 158.7 220 43.2
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 6.6e-37 158.3 191 45.5
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 6.6e-37 158.3 191 45.5
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 6.6e-37 158.3 191 45.5
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 6.6e-37 158.3 191 45.5
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 6.6e-37 158.3 191 45.5
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 1.1e-36 157.5 190 46.3
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 1.5e-36 157.1 169 47.9
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 1.9e-36 156.8 186 42.5
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 3.3e-36 156.0 173 46.2
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 4.3e-36 155.6 198 44.4
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 5.6e-36 155.2 177 50.8
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 8.1e-35 151.4 180 44.4
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 1.8e-34 150.2 208 42.8
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 3.1e-34 149.4 181 44.8
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 4.0e-34 149.1 131 58.8
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 1.2e-33 147.5 206 42.2
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 2.6e-33 146.4 138 51.4
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 2.6e-33 146.4 110 63.6
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 3.4e-33 146.0 167 45.5
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 1.7e-32 143.7 150 49.3
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 1.2e-30 137.5 208 39.9
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 6.0e-30 135.2 189 39.7
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.3e-29 134.0 206 39.8
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 1.3e-29 134.0 172 45.9
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 1.8e-29 133.7 149 45.6
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 1.5e-28 130.6 207 39.1
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 9.6e-28 127.9 158 46.8
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 9.6e-28 127.9 206 39.3
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 8.1e-27 124.8 315 32.7
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 2.4e-26 123.2 167 38.9
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 5.3e-26 122.1 291 30.2
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 9.0e-26 121.3 181 41.4
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.6e-25 119.8 181 40.9
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 3.4e-25 119.4 181 40.9
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 7.6e-25 118.2 178 41.0
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 1.3e-24 117.5 139 43.9
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 2.2e-24 116.7 109 50.5
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 3.8e-24 115.9 174 39.1
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 4.9e-24 115.5 94 56.4
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 1.9e-23 113.6 192 37.5
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 9.3e-23 111.3 158 39.2
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 2.1e-22 110.2 198 35.4
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 3.5e-22 109.4 128 46.9
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 4.6e-22 109.0 144 40.3
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 2.3e-21 106.7 136 47.1
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 8.7e-21 104.8 100 49.0
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 1.1e-20 104.4 187 38.0
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 2.5e-20 103.2 197 36.0
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 3.3e-20 102.8 192 32.3
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 4.3e-20 102.4 174 36.2
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 1.6e-19 100.5 142 41.5
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 4.0e-18 95.9 103 49.5
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 1.3e-16 90.9 104 41.3
Actinidia23006 Actinidia chinensis HOM05D001544 ORTHO05D005712 8.4e-16 88.2 59 69.5
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 1.9e-15 87.0 77 54.5
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 7.1e-15 85.1 130 30.8
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 2.1e-14 83.6 281 29.5
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 4.6e-14 82.4 113 41.6
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 7.9e-14 81.6 105 41.9
MBI14_g19736_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 9.6e-12 74.7 57 61.4
CBR_g17049 Chara braunii HOM05D068249 ORTHO05D005712 1.1e-07 61.2 191 26.2
TAR626G0405 Trochodendron aralioides HOM05D000010 ORTHO05D016350 2.7e-06 56.6 42 59.5
HPP92_028379 Vanilla planifolia HOM05D001544 ORTHO05D005712 6.1e-06 55.5 180 27.8


User provided reference genes

Program Settings