Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 4.3e-145 518.1 284 100.0
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 2.0e-97 359.8 340 57.9
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 2.6e-97 359.4 338 57.7
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 1.7e-96 356.7 311 61.1
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 4.9e-96 355.1 311 60.8
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 4.1e-95 352.1 311 59.8
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 1.2e-94 350.5 311 58.8
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 1.0e-93 347.4 311 59.2
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 1.0e-93 347.4 311 58.8
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 5.0e-93 345.1 342 55.6
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 6.6e-93 344.7 338 55.6
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 8.6e-93 344.4 311 59.5
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 1.5e-92 343.6 311 58.2
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 2.5e-92 342.8 343 58.6
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 3.6e-91 339.0 311 58.5
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 4.7e-91 338.6 311 58.5
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 1.4e-90 337.0 318 55.3
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 1.8e-90 336.7 311 55.9
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.0e-89 333.2 311 55.3
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 2.6e-89 332.8 311 55.3
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 3.4e-89 332.4 311 55.6
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 3.4e-89 332.4 311 55.6
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 4.4e-89 332.0 364 52.2
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 2.9e-88 329.3 311 55.6
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 2.9e-88 329.3 311 55.9
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 6.4e-88 328.2 337 53.1
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 8.3e-88 327.8 310 55.8
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 1.1e-87 327.4 335 53.4
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 2.4e-87 326.2 312 56.4
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 3.2e-87 325.9 311 54.7
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 3.2e-87 325.9 335 53.1
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 9.2e-87 324.3 311 55.3
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 9.2e-87 324.3 310 56.5
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 1.6e-86 323.6 321 56.1
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 7.8e-86 321.2 309 55.0
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 1.0e-85 320.9 309 55.7
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.3e-85 320.5 311 55.3
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.3e-85 320.5 311 55.3
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 1.3e-85 320.5 311 55.3
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 1.3e-85 320.5 311 54.3
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 1.7e-85 320.1 311 55.0
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 1.7e-85 320.1 311 54.3
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 6.6e-85 318.2 311 54.0
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 8.6e-85 317.8 337 51.0
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 3.3e-84 315.8 311 54.0
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 4.3e-84 315.5 311 54.0
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 4.3e-84 315.5 306 54.6
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 2.1e-83 313.2 311 53.7
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 2.1e-83 313.2 311 53.7
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 6.2e-83 311.6 311 53.7
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 6.2e-83 311.6 336 53.6
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 8.1e-83 311.2 311 53.4
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 8.1e-83 311.2 311 53.7
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 5.2e-82 308.5 314 54.1
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 6.8e-82 308.1 311 53.4
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 6.8e-82 308.1 311 53.1
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 6.8e-82 308.1 311 53.4
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 2.0e-81 306.6 311 52.7
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 2.0e-81 306.6 311 53.4
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 7.5e-81 304.7 311 53.1
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 7.5e-81 304.7 285 58.2
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 9.8e-81 304.3 311 53.7
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 2.2e-80 303.1 360 48.6
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.2e-79 299.3 323 52.9
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 4.1e-79 298.9 311 51.1
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 5.4e-79 298.5 311 51.8
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 3.5e-78 295.8 311 51.1
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 3.5e-78 295.8 311 51.1
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 1.7e-77 293.5 311 51.8
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 1.9e-76 290.0 342 46.8
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 9.5e-76 287.7 309 50.2
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 4.7e-75 285.4 312 51.9
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 1.4e-74 283.9 309 49.2
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 6.8e-74 281.6 311 48.9
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 2.0e-73 280.0 317 50.8
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 2.2e-72 276.6 330 48.8
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 3.2e-71 272.7 312 51.3
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 3.2e-71 272.7 311 49.2
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 9.2e-71 271.2 262 55.0
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 9.2e-71 271.2 378 45.5
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 2.7e-70 269.6 262 55.0
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 4.6e-70 268.9 283 51.6
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 3.9e-69 265.8 311 47.3
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 1.5e-68 263.8 311 47.9
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 1.5e-68 263.8 311 49.8
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 9.9e-65 251.1 290 47.9
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.7e-64 250.4 235 59.6
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 1.4e-63 247.3 304 46.4
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 3.2e-63 246.1 235 57.9
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 3.2e-63 246.1 261 54.4
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 7.1e-63 245.0 271 51.3
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 1.9e-60 236.9 234 56.4
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 1.6e-59 233.8 305 44.3
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 2.8e-59 233.0 311 44.4
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 2.8e-59 233.0 310 41.6
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 4.8e-59 232.3 260 52.3
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.4e-58 229.9 338 43.8
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 9.9e-57 224.6 234 53.8
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 2.4e-55 219.9 234 51.3
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 2.7e-54 216.5 231 50.6
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 4.6e-54 215.7 234 51.7
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 9.6e-52 208.0 207 57.5
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 1.6e-51 207.2 280 42.9
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 6.4e-48 195.3 331 37.8
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 5.8e-41 172.2 185 53.5
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 7.6e-41 171.8 316 35.1
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 1.1e-34 151.4 315 34.3
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 3.2e-31 139.8 103 68.9
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 3.6e-30 136.3 182 44.5
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.8e-29 134.0 177 44.1
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.1e-26 124.8 77 76.6
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 5.9e-25 119.0 177 40.7
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 7.7e-25 118.6 77 75.3
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 6.5e-24 115.5 75 73.3
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 3.2e-23 113.2 81 67.9
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 4.2e-23 112.8 151 39.7
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 9.4e-23 111.7 73 72.6
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 4.6e-22 109.4 95 53.7
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 1.0e-21 108.2 119 48.7
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 7.4e-20 102.1 416 25.7
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 9.7e-20 101.7 64 76.6
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.3e-19 101.3 138 44.2
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 2.8e-19 100.1 108 47.2
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 4.8e-19 99.4 131 43.5
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 4.8e-11 72.8 75 53.3
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 1.7e-08 64.3 165 26.7


User provided reference genes

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