Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 9.7e-201 703.7 494 100.0
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 7.7e-81 305.4 486 48.8
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 1.1e-76 291.6 457 47.3
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.7e-72 277.7 526 43.0
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 6.5e-72 275.8 428 44.9
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.6e-70 271.2 510 47.1
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 2.3e-69 267.3 515 47.4
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.7e-64 251.1 458 43.4
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.7e-64 251.1 457 44.4
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 2.9e-64 250.4 513 47.0
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 5.0e-64 249.6 508 43.5
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 1.6e-62 244.6 492 41.3
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.8e-61 241.1 475 43.6
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 2.3e-61 240.7 426 42.7
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 2.6e-60 237.3 425 41.9
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 5.7e-60 236.1 482 42.1
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 7.5e-60 235.7 477 42.6
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 3.5e-57 226.9 422 47.4
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 7.7e-57 225.7 428 40.4
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 7.7e-57 225.7 428 40.4
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 6.6e-56 222.6 475 41.3
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 6.6e-56 222.6 424 41.3
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 6.6e-56 222.6 460 43.5
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 3.3e-55 220.3 461 39.7
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 4.2e-55 219.9 455 40.4
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 9.5e-55 218.8 456 42.3
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 2.8e-54 217.2 460 42.2
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 2.8e-54 217.2 460 42.2
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 2.8e-54 217.2 431 41.3
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 3.6e-54 216.9 428 39.7
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 6.1e-54 216.1 434 43.8
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 3.0e-53 213.8 522 37.9
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 5.2e-53 213.0 446 40.1
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 4.4e-52 209.9 481 42.6
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 4.4e-52 209.9 425 39.5
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 7.5e-52 209.1 465 40.0
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 9.8e-52 208.8 479 37.6
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 3.7e-51 206.8 459 42.7
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 1.4e-50 204.9 521 37.0
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 3.1e-50 203.8 429 38.0
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 5.4e-50 203.0 522 37.2
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 5.9e-49 199.5 418 40.0
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 1.3e-48 198.4 405 39.3
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 1.7e-48 198.0 418 38.0
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 1.7e-48 198.0 496 35.1
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 2.3e-48 197.6 451 46.8
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 2.9e-48 197.2 435 39.3
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 3.9e-48 196.8 427 42.6
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 8.6e-48 195.7 419 37.7
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 1.5e-47 194.9 502 37.6
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 1.9e-47 194.5 461 45.6
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 1.9e-47 194.5 563 36.4
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 1.6e-46 191.4 418 37.3
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.6e-46 191.4 449 39.9
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 2.1e-46 191.0 452 46.7
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 4.7e-46 189.9 464 46.8
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 4.7e-46 189.9 426 38.3
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 1.4e-45 188.3 406 37.7
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 2.3e-45 187.6 425 37.4
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 4.0e-45 186.8 388 41.2
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 5.2e-45 186.4 390 42.3
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 3.4e-44 183.7 458 47.2
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 4.9e-43 179.9 432 37.0
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 4.9e-43 179.9 432 37.0
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 6.4e-43 179.5 445 37.8
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 1.9e-42 177.9 450 45.8
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 7.0e-42 176.0 451 35.7
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 1.2e-41 175.3 477 38.6
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 1.6e-41 174.9 533 38.3
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 1.6e-41 174.9 417 48.9
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 1.6e-41 174.9 448 39.1
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 7.8e-41 172.6 447 34.7
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 3.0e-40 170.6 419 36.0
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 3.0e-40 170.6 431 37.4
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 6.6e-40 169.5 471 34.6
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 1.9e-39 167.9 483 44.1
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 4.3e-39 166.8 568 34.7
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 6.2e-38 162.9 473 47.4
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 8.0e-38 162.5 220 49.1
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 8.0e-38 162.5 221 49.3
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 1.1e-37 162.2 221 48.9
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 5.2e-37 159.8 489 45.2
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 5.2e-37 159.8 422 43.4
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 6.8e-37 159.5 440 41.1
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.2e-36 158.7 495 34.9
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 1.5e-36 158.3 438 35.2
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 2.0e-36 157.9 484 45.2
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 2.6e-36 157.5 459 41.8
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 1.7e-35 154.8 489 45.0
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 3.7e-35 153.7 425 34.4
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 4.9e-35 153.3 435 44.8
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 1.4e-34 151.8 487 39.4
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 3.2e-34 150.6 163 52.1
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 5.4e-34 149.8 532 33.5
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 7.0e-34 149.4 610 32.6
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 9.2e-34 149.1 488 39.1
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 1.2e-33 148.7 423 37.4
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.2e-33 148.7 610 32.5
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 1.6e-33 148.3 468 35.3
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 2.7e-33 147.5 473 33.0
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 3.5e-33 147.1 506 44.1
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 2.3e-32 144.4 473 32.6
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 3.0e-32 144.1 346 39.6
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 3.3e-31 140.6 479 40.5
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 3.3e-31 140.6 479 40.5
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 3.3e-31 140.6 379 35.6
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 4.3e-31 140.2 424 33.5
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 5.6e-31 139.8 490 32.2
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 7.3e-31 139.4 477 33.1
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 9.5e-31 139.0 425 31.8
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 1.2e-30 138.7 456 33.3
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 3.6e-30 137.1 421 35.9
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 1.1e-29 135.6 540 33.1
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 3.1e-29 134.0 461 34.7
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 3.1e-29 134.0 410 32.2
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 4.0e-29 133.7 488 39.3
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 5.2e-29 133.3 468 35.0
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 1.2e-28 132.1 462 35.3
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 2.0e-28 131.3 427 34.2
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 2.0e-28 131.3 421 37.8
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 3.4e-28 130.6 461 34.3
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.7e-27 128.3 145 51.0
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 4.9e-27 126.7 420 31.0
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 2.1e-25 121.3 482 38.4
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 2.1e-25 121.3 482 37.8
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.3e-24 118.6 504 35.1
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 1.1e-23 115.5 475 30.5
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 1.9e-23 114.8 471 30.6
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 3.3e-23 114.0 513 30.0
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 5.6e-23 113.2 557 30.2
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 9.5e-23 112.5 477 32.3
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 4.7e-22 110.2 463 31.3
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 4.7e-22 110.2 194 40.2
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 2.4e-21 107.8 435 31.3
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 3.1e-21 107.5 360 33.1
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 2.2e-19 101.3 445 31.2
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 3.8e-19 100.5 166 44.6
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 3.8e-19 100.5 139 47.5
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 6.4e-19 99.8 496 31.2
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.9e-18 98.2 421 29.2
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 9.2e-18 95.9 431 31.1
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 1.2e-17 95.5 490 34.1
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 6.0e-17 93.2 427 32.3
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 2.3e-16 91.3 493 36.7
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 8.7e-16 89.4 208 38.9
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 5.6e-15 86.7 545 34.1
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 9.6e-15 85.9 148 41.9
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.3e-14 85.5 444 27.7
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 8.1e-14 82.8 216 38.4
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 1.4e-13 82.0 145 39.3
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 5.3e-13 80.1 419 27.7
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 2.0e-12 78.2 192 34.4
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 7.6e-12 76.3 422 26.8
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.3e-11 75.5 94 55.3
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 4.9e-11 73.6 173 38.7
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 8.4e-11 72.8 427 28.3
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 8.4e-11 72.8 431 26.5
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 1.9e-10 71.6 305 37.7
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 2.4e-10 71.2 438 34.7
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 3.2e-10 70.9 88 53.4
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 9.3e-10 69.3 107 43.9
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 2.3e-08 64.7 425 27.8
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 8.7e-08 62.8 160 31.2
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 2.5e-07 61.2 206 33.5
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 9.6e-07 59.3 206 33.5
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 9.6e-07 59.3 488 26.4
TAR628G0576 Trochodendron aralioides HOM05D003733 ORTHO05D004035 2.8e-06 57.8 78 47.4
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 3.6e-06 57.4 396 24.5
CSS0018014 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 4.8e-06 57.0 83 47.0
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 4.8e-06 57.0 214 29.9
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 4.8e-06 57.0 418 30.9
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 6.2e-06 56.6 137 30.7


User provided reference genes

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