Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 5.7e-46 187.2 92 100.0
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 4.7e-32 141.0 89 75.3
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.4e-31 139.4 89 75.3
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 2.3e-31 138.7 90 74.4
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 3.0e-31 138.3 89 69.7
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 4.0e-31 137.9 88 70.5
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 4.0e-31 137.9 89 76.4
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 6.7e-31 137.1 92 73.9
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 8.8e-31 136.7 89 73.0
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.2e-30 136.3 89 74.2
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 1.2e-30 136.3 89 73.0
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 2.0e-30 135.6 89 74.2
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 3.3e-30 134.8 89 70.8
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 4.4e-30 134.4 89 73.0
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 4.4e-30 134.4 89 69.7
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 5.7e-30 134.0 89 71.9
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 7.5e-30 133.7 89 70.8
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 7.5e-30 133.7 89 73.0
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 7.5e-30 133.7 89 70.8
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 7.5e-30 133.7 89 74.2
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 9.7e-30 133.3 89 69.7
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 1.3e-29 132.9 89 70.8
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 1.3e-29 132.9 89 70.8
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.3e-29 132.9 89 69.7
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 1.7e-29 132.5 89 69.7
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 2.2e-29 132.1 90 74.4
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.2e-29 132.1 89 68.5
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 2.2e-29 132.1 89 71.9
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 2.2e-29 132.1 89 70.8
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 2.8e-29 131.7 89 74.2
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 2.8e-29 131.7 89 71.9
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 3.7e-29 131.3 89 71.9
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 3.7e-29 131.3 89 73.0
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.7e-29 131.3 89 73.0
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 3.7e-29 131.3 89 70.8
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 3.7e-29 131.3 90 71.1
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 6.3e-29 130.6 87 73.6
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 8.2e-29 130.2 89 68.5
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 8.2e-29 130.2 89 73.0
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 1.1e-28 129.8 92 70.7
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 1.4e-28 129.4 89 69.7
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.4e-28 129.4 89 71.9
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.4e-28 129.4 89 71.9
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 1.4e-28 129.4 93 69.9
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 1.8e-28 129.0 89 70.8
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 1.8e-28 129.0 90 67.8
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 2.4e-28 128.6 89 69.7
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.4e-28 128.6 88 68.2
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 2.4e-28 128.6 91 67.0
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 2.4e-28 128.6 89 67.4
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 3.1e-28 128.3 89 69.7
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 4.1e-28 127.9 89 68.5
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 4.1e-28 127.9 89 70.8
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 4.1e-28 127.9 92 67.4
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 4.1e-28 127.9 92 67.4
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 5.3e-28 127.5 89 68.5
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 5.3e-28 127.5 89 68.5
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 5.3e-28 127.5 89 67.4
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 7.0e-28 127.1 84 71.4
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 7.0e-28 127.1 84 71.4
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 7.0e-28 127.1 92 70.7
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 7.0e-28 127.1 89 68.5
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 9.1e-28 126.7 89 73.0
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 9.1e-28 126.7 89 73.0
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 9.1e-28 126.7 92 70.7
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 1.2e-27 126.3 89 67.4
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 1.6e-27 125.9 91 71.4
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 1.6e-27 125.9 91 71.4
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 2.0e-27 125.6 92 70.7
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 2.0e-27 125.6 89 70.8
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 2.0e-27 125.6 89 68.5
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.7e-27 125.2 89 69.7
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.7e-27 125.2 89 69.7
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 2.7e-27 125.2 89 64.0
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 2.7e-27 125.2 86 66.3
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 3.5e-27 124.8 90 67.8
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 3.5e-27 124.8 90 71.1
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 4.5e-27 124.4 91 67.0
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 4.5e-27 124.4 89 67.4
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 7.7e-27 123.6 89 68.5
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 1.0e-26 123.2 91 69.2
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 1.0e-26 123.2 91 68.1
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.3e-26 122.9 89 65.2
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 1.3e-26 122.9 89 64.0
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 1.3e-26 122.9 89 65.2
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.3e-26 122.9 90 66.7
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 2.2e-26 122.1 81 71.6
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 2.2e-26 122.1 90 67.8
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 2.9e-26 121.7 90 64.4
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 2.9e-26 121.7 91 68.1
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 5.0e-26 120.9 89 62.9
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 5.0e-26 120.9 89 64.0
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 6.5e-26 120.6 91 64.8
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 6.5e-26 120.6 90 66.7
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 1.1e-25 119.8 92 66.3
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 1.1e-25 119.8 91 67.0
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 1.5e-25 119.4 92 65.2
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 3.2e-25 118.2 90 65.6
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 3.2e-25 118.2 91 63.7
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 4.2e-25 117.9 88 65.9
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 4.2e-25 117.9 89 62.9
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 7.2e-25 117.1 89 59.6
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.2e-24 116.3 91 65.9
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 1.6e-24 115.9 117 53.8
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.1e-24 115.5 89 66.3
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 2.1e-24 115.5 90 64.4
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 2.1e-24 115.5 92 64.1
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 2.7e-24 115.2 89 58.4
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 3.6e-24 114.8 89 62.9
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 4.7e-24 114.4 90 66.7
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 6.1e-24 114.0 90 63.3
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 6.1e-24 114.0 93 63.4
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 1.4e-23 112.8 93 66.7
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 1.8e-23 112.5 96 64.6
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 4.0e-23 111.3 90 64.4
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 5.2e-23 110.9 92 60.9
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 6.8e-23 110.5 93 63.4
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.5e-22 109.4 83 63.9
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.7e-21 105.9 86 58.1
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 2.2e-21 105.5 89 61.8
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 3.7e-21 104.8 91 58.2
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 3.7e-21 104.8 90 63.3
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 4.8e-21 104.4 89 58.4
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 4.8e-21 104.4 92 58.7
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 8.3e-21 103.6 92 58.7
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 2.4e-20 102.1 92 57.6
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.6e-19 99.4 51 82.4
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 2.0e-19 99.0 70 67.1
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 6.5e-18 94.0 74 63.5
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 1.1e-17 93.2 79 60.8
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 1.9e-17 92.4 74 64.9
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 4.2e-17 91.3 74 66.2
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 7.2e-17 90.5 74 67.6
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 7.2e-17 90.5 76 65.8
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 9.5e-17 90.1 65 61.5
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.6e-14 82.0 90 51.1
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 1.3e-13 79.7 77 58.4
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 3.7e-13 78.2 95 46.3
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 3.1e-12 75.1 76 53.9
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 2.7e-11 72.0 76 46.1
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 4.5e-11 71.2 91 47.3
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 7.8e-11 70.5 87 41.4
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 7.8e-11 70.5 77 51.9
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 1.1e-09 66.6 74 47.3
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 4.3e-09 64.7 76 46.1
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 4.3e-09 64.7 40 70.0
A01p01210 Brassica napus HOM05D004858 ORTHO05D005600 4.7e-08 61.2 59 52.5
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 1.8e-07 59.3 52 59.6
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 1.8e-07 59.3 52 59.6
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 1.8e-07 59.3 89 39.3
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 2.3e-07 58.9 74 41.9
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 5.7e-06 54.3 42 57.1


User provided reference genes

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