Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 1.8e-270 935.3 439 100.0
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 1.3e-153 547.0 288 87.2
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 7.4e-152 541.2 288 85.8
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 2.2e-151 539.7 288 86.1
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 4.8e-151 538.5 288 85.8
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 1.8e-150 536.6 288 86.5
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 2.4e-150 536.2 288 86.1
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 3.1e-150 535.8 288 86.5
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 1.5e-149 533.5 288 84.7
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.5e-149 533.5 288 84.0
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 2.6e-149 532.7 288 84.4
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 7.7e-149 531.2 288 83.3
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 1.7e-148 530.0 288 84.7
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 3.8e-148 528.9 288 85.4
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 1.9e-147 526.6 288 82.6
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 2.5e-147 526.2 288 83.7
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 4.2e-147 525.4 287 83.6
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 7.2e-147 524.6 288 84.7
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 4.6e-146 521.9 288 83.0
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 4.6e-146 521.9 288 83.0
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 6.1e-146 521.5 288 83.0
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 7.9e-146 521.2 288 82.3
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 7.9e-146 521.2 280 86.1
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.4e-145 520.4 288 82.6
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 3.0e-145 519.2 288 82.3
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 3.0e-145 519.2 288 83.3
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 3.0e-145 519.2 288 83.3
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 5.1e-145 518.5 288 82.3
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 5.1e-145 518.5 288 83.0
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 6.7e-145 518.1 288 81.9
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 8.8e-145 517.7 288 83.7
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.1e-144 517.3 288 81.9
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.5e-144 516.9 288 81.6
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 2.0e-144 516.5 288 82.3
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 2.5e-144 516.2 288 83.3
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 3.3e-144 515.8 288 83.0
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 5.7e-144 515.0 282 84.0
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 5.7e-144 515.0 288 81.2
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 7.4e-144 514.6 288 82.3
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 9.7e-144 514.2 273 86.1
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 1.3e-143 513.8 288 82.3
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.7e-143 513.5 288 81.6
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 3.7e-143 512.3 288 82.6
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.8e-142 510.0 288 82.6
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 1.8e-142 510.0 280 81.8
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 2.4e-142 509.6 288 84.7
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 2.4e-142 509.6 288 82.6
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 3.1e-142 509.2 288 80.9
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 1.2e-141 507.3 288 80.9
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 1.5e-141 506.9 288 80.6
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 1.5e-141 506.9 288 81.2
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 2.6e-141 506.1 283 82.7
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 2.6e-141 506.1 283 82.7
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 2.6e-141 506.1 288 78.5
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 2.6e-141 506.1 288 79.2
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 2.6e-141 506.1 288 79.5
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 3.4e-141 505.8 288 79.9
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 3.4e-141 505.8 288 79.9
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 4.5e-141 505.4 288 79.5
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 4.5e-141 505.4 288 79.9
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 4.5e-141 505.4 288 81.2
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 5.9e-141 505.0 288 79.5
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 1.0e-140 504.2 288 78.1
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.7e-140 503.4 288 79.2
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 1.7e-140 503.4 288 79.2
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 2.2e-140 503.1 288 79.5
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 2.9e-140 502.7 282 80.9
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 3.8e-140 502.3 282 81.6
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 5.0e-140 501.9 283 81.3
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 6.5e-140 501.5 288 79.5
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 6.5e-140 501.5 288 80.6
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 1.1e-139 500.7 283 81.6
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 1.1e-139 500.7 266 85.3
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.1e-139 500.7 288 78.5
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 1.1e-139 500.7 288 78.1
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.9e-139 500.0 288 79.5
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.9e-139 500.0 288 79.2
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 2.5e-139 499.6 288 80.6
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 2.5e-139 499.6 282 80.5
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 5.5e-139 498.4 288 79.9
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 7.2e-139 498.0 288 78.8
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 9.4e-139 497.7 288 79.9
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 9.4e-139 497.7 284 78.9
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.2e-138 497.3 288 78.1
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 2.7e-138 496.1 283 79.9
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 4.7e-138 495.4 288 79.2
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 1.0e-137 494.2 288 79.5
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 1.4e-137 493.8 288 78.1
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 1.4e-137 493.8 288 78.5
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.4e-137 493.8 288 78.8
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 1.8e-137 493.4 288 77.4
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 2.3e-137 493.0 288 77.4
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 2.3e-137 493.0 288 77.4
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 2.3e-137 493.0 283 80.2
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 3.0e-137 492.7 288 77.8
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 6.7e-137 491.5 282 79.1
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 6.7e-137 491.5 288 78.1
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 1.1e-136 490.7 282 79.4
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 5.7e-136 488.4 282 79.1
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 5.7e-136 488.4 288 77.8
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 7.4e-136 488.0 285 80.0
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 9.7e-136 487.6 288 77.1
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 9.7e-136 487.6 288 78.1
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 1.7e-135 486.9 283 78.1
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 2.2e-135 486.5 282 79.1
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 4.8e-135 485.3 282 79.8
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 1.8e-134 483.4 288 75.3
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.3e-132 477.2 288 77.4
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 7.2e-131 471.5 288 77.4
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 3.6e-130 469.2 298 74.5
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 1.0e-129 467.6 288 75.0
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 1.8e-129 466.8 292 75.7
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 2.8e-127 459.5 282 75.2
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 1.4e-126 457.2 283 76.3
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 9.1e-126 454.5 288 72.9
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 2.6e-125 453.0 288 72.2
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 3.5e-125 452.6 288 73.3
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 9.1e-118 427.9 288 69.4
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 1.2e-117 427.6 289 69.6
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.9e-115 420.2 276 72.1
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.6e-109 400.6 255 73.7
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 1.6e-106 390.6 214 82.2
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.2e-104 384.4 281 65.5
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.2e-85 321.2 288 57.6
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 3.9e-84 316.2 288 55.2
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 3.3e-83 313.2 170 85.9
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 5.6e-83 312.4 194 72.2
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 5.6e-75 285.8 210 68.1
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 5.8e-72 275.8 266 51.5
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 6.4e-71 272.3 153 79.1
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.3e-68 264.6 143 86.0
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 8.7e-68 261.9 143 83.9
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 7.3e-67 258.8 153 73.9
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.2e-64 251.5 156 73.7
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 1.5e-64 251.1 140 82.9
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 2.6e-64 250.4 288 47.6
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 4.4e-64 249.6 147 74.8
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 1.2e-48 198.4 136 69.1
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.5e-40 171.4 116 70.7
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 8.7e-36 155.6 138 55.8
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 1.6e-29 134.8 70 84.3
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 3.0e-20 104.0 72 66.7
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 6.7e-20 102.8 66 69.7
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.5e-19 101.7 78 61.5
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 1.7e-18 98.2 64 65.6
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 2.2e-18 97.8 83 57.8
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 3.7e-18 97.1 72 62.5
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.8e-17 94.7 66 63.6
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 8.5e-15 85.9 67 55.2
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 3.2e-14 84.0 65 60.0
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 2.1e-13 81.3 72 54.2
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 2.3e-12 77.8 49 69.4
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 8.8e-12 75.9 46 71.7
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 4.1e-09 67.0 41 65.9
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 7.0e-09 66.2 36 83.3


User provided reference genes

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