Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 0.0e+00 1075.8 514 100.0
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 1.5e-260 902.5 542 80.6
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 2.8e-259 898.3 544 78.7
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 2.0e-257 892.1 539 79.0
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 2.3e-253 878.6 590 73.2
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 5.5e-247 857.4 544 75.9
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 4.6e-246 854.4 539 75.9
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 2.3e-245 852.0 544 75.0
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 3.1e-242 841.6 545 73.8
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 1.0e-240 836.6 540 74.8
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 3.0e-237 825.1 629 66.5
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 1.5e-236 822.8 565 70.6
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 6.1e-230 800.8 543 72.6
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 1.8e-229 799.3 451 84.3
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 2.0e-228 795.8 451 82.9
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 7.4e-228 793.9 452 82.5
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 3.1e-226 788.5 448 83.5
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 4.1e-226 788.1 538 72.3
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 5.3e-226 787.7 491 78.0
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 2.9e-224 781.9 448 82.8
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 1.9e-223 779.2 453 82.6
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.9e-223 779.2 453 80.4
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.5e-223 778.9 451 81.6
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.2e-222 776.5 451 80.5
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 1.2e-222 776.5 453 82.1
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 2.1e-222 775.8 472 79.0
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 5.1e-221 771.2 451 80.0
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 6.7e-221 770.8 450 80.7
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 2.8e-219 765.4 448 80.4
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 1.1e-218 763.5 450 80.4
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.8e-218 762.7 451 80.9
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 2.4e-218 762.3 451 80.3
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 2.4e-218 762.3 451 80.9
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 3.1e-218 761.9 444 81.1
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 3.1e-218 761.9 453 79.5
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 7.0e-218 760.8 451 80.3
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.2e-217 760.0 453 79.2
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.0e-217 759.2 453 78.8
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 2.0e-217 759.2 435 82.3
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.6e-217 758.8 451 79.2
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 4.5e-217 758.1 453 79.9
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 7.7e-217 757.3 453 78.8
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 7.7e-217 757.3 450 80.0
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.0e-216 756.9 453 78.8
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 1.0e-216 756.9 455 78.2
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.0e-216 756.9 450 80.2
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 1.7e-216 756.1 451 80.3
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 1.7e-216 756.1 453 79.7
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 1.4e-215 753.1 443 80.8
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 5.5e-215 751.1 451 78.7
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.1e-214 749.2 463 77.3
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 3.6e-214 748.4 448 79.7
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 3.6e-214 748.4 448 79.7
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 3.6e-214 748.4 453 78.1
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 8.0e-214 747.3 451 78.7
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 1.8e-213 746.1 451 78.3
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 3.9e-213 745.0 446 79.6
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 5.2e-213 744.6 450 78.7
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 1.5e-212 743.0 452 76.8
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 2.0e-212 742.7 453 77.7
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 2.6e-212 742.3 452 77.2
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 4.4e-212 741.5 442 79.2
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 5.7e-212 741.1 452 77.2
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 1.7e-211 739.6 453 77.0
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 1.7e-211 739.6 453 77.0
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 2.2e-211 739.2 451 78.0
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 2.8e-211 738.8 449 77.3
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 6.3e-211 737.6 452 76.3
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 6.3e-211 737.6 453 77.3
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 8.2e-211 737.3 453 76.4
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 8.2e-211 737.3 446 77.6
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 8.2e-211 737.3 448 78.6
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 1.4e-210 736.5 453 77.5
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 3.1e-210 735.3 453 76.4
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 5.3e-210 734.6 453 76.6
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 7.0e-210 734.2 453 76.6
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 2.0e-209 732.6 447 77.4
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 2.6e-209 732.3 448 76.3
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 5.9e-209 731.1 448 77.0
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 7.7e-209 730.7 447 77.6
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.3e-208 729.9 452 76.1
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.3e-208 729.9 447 77.9
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 1.3e-208 729.9 453 76.6
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.3e-208 729.9 453 75.9
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 1.7e-208 729.6 453 76.8
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 2.2e-208 729.2 452 76.3
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 2.2e-208 729.2 453 76.8
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.1e-207 726.9 453 76.4
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 3.2e-207 725.3 483 72.9
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 5.5e-207 724.5 453 75.9
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 7.2e-207 724.2 447 76.5
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 7.2e-207 724.2 448 75.9
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 2.1e-206 722.6 443 77.0
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 6.1e-206 721.1 451 76.7
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 4.4e-204 714.9 448 74.3
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 7.5e-204 714.1 453 74.4
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 9.7e-204 713.8 469 73.1
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 9.7e-204 713.8 448 76.1
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 2.2e-203 712.6 453 74.2
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 4.8e-203 711.4 453 74.0
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 6.3e-203 711.1 453 74.0
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 6.3e-203 711.1 453 74.0
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 2.4e-202 709.1 479 72.2
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 5.3e-202 708.0 447 73.8
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 6.5e-200 701.0 452 74.3
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 1.6e-198 696.4 520 67.5
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 3.6e-198 695.3 444 74.1
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 6.1e-198 694.5 485 69.9
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 1.2e-196 690.3 412 78.4
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 1.3e-192 676.8 452 71.9
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 1.2e-190 670.2 448 72.3
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.3e-187 660.2 445 69.9
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 2.8e-187 659.1 449 69.9
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.4e-181 640.2 425 73.4
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 2.6e-180 636.0 452 67.9
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 2.2e-179 632.9 380 79.2
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 3.6e-174 615.5 388 75.0
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 6.8e-173 611.3 377 75.1
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.2e-172 610.5 464 66.2
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 3.0e-160 569.3 446 64.1
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.5e-151 539.7 334 78.1
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 4.8e-142 508.8 288 84.7
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.4e-141 507.3 434 61.5
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 7.1e-138 495.0 268 85.4
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 4.3e-135 485.7 431 60.8
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 9.0e-133 478.0 265 84.5
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 1.7e-131 473.8 316 69.6
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.5e-124 450.7 351 61.8
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.0e-103 380.6 295 62.7
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 2.3e-88 330.5 162 95.1
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.6e-84 317.8 281 57.3
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 1.7e-70 271.2 152 79.6
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 3.9e-67 260.0 161 72.0
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 4.3e-66 256.5 194 63.4
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 3.6e-65 253.4 145 75.9
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 4.7e-65 253.1 145 76.6
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.4e-64 251.5 146 79.5
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 4.0e-64 250.0 198 62.6
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 7.5e-63 245.7 152 73.0
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.6e-57 228.0 256 45.7
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 3.5e-52 210.3 135 74.1
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 3.3e-50 203.8 113 84.1
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 7.6e-47 192.6 111 82.0
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 3.3e-42 177.2 201 47.8
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 4.3e-42 176.8 116 72.4
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 1.5e-34 151.8 140 54.3
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.7e-27 128.3 81 74.1
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 7.4e-26 122.9 74 77.0
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 9.6e-26 122.5 73 78.1
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 5.3e-24 116.7 66 77.3
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.5e-23 115.2 55 90.9
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 4.9e-22 110.2 69 73.9
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 8.4e-22 109.4 73 71.2
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 2.4e-21 107.8 78 61.5
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 1.5e-18 98.6 89 56.2
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.4e-13 82.0 49 71.4
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 2.5e-13 81.3 62 62.9
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 3.2e-13 80.9 65 55.4
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 1.3e-11 75.5 43 74.4
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 7.4e-10 69.7 36 86.1
MCO01G322 Micromonas commoda HOM05D004306 ORTHO05D005055 1.2e-07 62.4 314 24.2


User provided reference genes

Program Settings