Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 2.2e-105 385.6 188 100.0
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 3.8e-81 305.1 169 87.0
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 3.8e-81 305.1 169 85.8
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 1.1e-80 303.5 172 85.5
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 2.5e-80 302.4 171 82.5
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 4.2e-80 301.6 172 85.5
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 6.1e-79 297.7 181 78.5
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 6.1e-79 297.7 181 78.5
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 1.4e-78 296.6 169 83.4
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 1.8e-78 296.2 168 86.9
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 4.0e-78 295.0 181 77.9
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 1.5e-77 293.1 169 82.8
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 4.4e-77 291.6 168 82.1
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 1.7e-76 289.7 181 75.7
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 2.8e-76 288.9 169 82.2
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 6.3e-76 287.7 170 80.0
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 2.4e-75 285.8 168 81.0
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 3.1e-75 285.4 168 79.2
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 9.1e-75 283.9 169 82.2
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 1.2e-74 283.5 168 82.1
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 1.2e-74 283.5 169 81.7
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 2.0e-74 282.7 169 82.2
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 7.7e-74 280.8 169 81.7
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 1.0e-73 280.4 169 79.3
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 1.0e-73 280.4 180 76.1
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 1.3e-73 280.0 178 75.8
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 1.7e-73 279.6 168 80.4
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 2.2e-73 279.3 169 81.1
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 5.0e-73 278.1 169 80.5
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 1.5e-72 276.6 169 79.3
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.5e-72 276.6 171 78.4
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 1.5e-72 276.6 169 80.5
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.9e-72 276.2 169 80.5
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 1.9e-72 276.2 170 80.6
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 1.9e-72 276.2 169 80.5
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 4.2e-72 275.0 171 80.7
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 5.5e-72 274.6 169 78.7
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 5.5e-72 274.6 171 79.5
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 7.2e-72 274.2 169 80.5
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 7.2e-72 274.2 170 78.8
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 7.2e-72 274.2 168 77.4
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 9.4e-72 273.9 170 78.8
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 9.4e-72 273.9 170 78.8
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 1.2e-71 273.5 169 79.3
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 1.2e-71 273.5 169 80.5
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 1.6e-71 273.1 169 80.5
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 1.6e-71 273.1 169 79.3
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 1.6e-71 273.1 169 79.9
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 2.7e-71 272.3 170 78.8
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 4.7e-71 271.6 170 78.2
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 6.1e-71 271.2 169 78.1
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 8.0e-71 270.8 169 79.3
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 8.0e-71 270.8 168 74.4
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.4e-70 270.0 173 75.1
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 2.3e-70 269.2 173 75.1
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 4.0e-70 268.5 169 76.3
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 4.0e-70 268.5 169 75.7
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 5.2e-70 268.1 171 77.8
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 5.2e-70 268.1 168 78.6
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 6.8e-70 267.7 170 78.8
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 2.6e-69 265.8 168 78.0
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 7.5e-69 264.2 168 75.6
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 1.7e-68 263.1 169 74.0
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.7e-68 263.1 178 71.9
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 1.7e-68 263.1 168 75.6
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 1.7e-68 263.1 170 74.7
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 2.2e-68 262.7 170 74.7
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 2.8e-68 262.3 171 75.4
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 2.8e-68 262.3 171 71.3
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 3.7e-68 261.9 168 78.0
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 6.3e-68 261.2 169 74.6
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 6.3e-68 261.2 169 74.6
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 8.3e-68 260.8 170 72.4
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 1.4e-67 260.0 170 72.4
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 1.4e-67 260.0 170 72.4
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.4e-67 260.0 214 62.1
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.4e-67 260.0 214 62.1
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 1.8e-67 259.6 171 74.9
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 2.4e-67 259.2 169 74.6
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 3.1e-67 258.8 168 74.4
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 3.1e-67 258.8 171 76.6
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 3.1e-67 258.8 169 72.8
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 5.4e-67 258.1 170 72.9
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 5.4e-67 258.1 169 75.1
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 1.6e-66 256.5 159 78.0
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 3.5e-66 255.4 169 72.8
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 7.7e-66 254.2 168 72.6
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 1.3e-65 253.4 181 70.7
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 2.3e-65 252.7 169 74.6
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 2.9e-65 252.3 169 74.0
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 1.9e-64 249.6 168 72.6
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 3.2e-64 248.8 169 73.4
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 5.5e-64 248.1 168 73.2
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 7.2e-64 247.7 169 72.2
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 9.5e-64 247.3 168 73.8
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 4.7e-63 245.0 168 70.8
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 4.7e-63 245.0 171 70.8
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 1.4e-62 243.4 171 66.1
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 5.2e-62 241.5 169 71.6
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 5.2e-62 241.5 169 69.8
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 9.8e-61 237.3 169 66.9
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 9.8e-61 237.3 169 67.5
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 2.8e-60 235.7 172 69.2
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 1.1e-59 233.8 169 66.9
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 3.1e-59 232.3 168 69.6
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 4.1e-59 231.9 168 70.2
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 4.1e-59 231.9 168 70.2
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 1.6e-58 229.9 169 68.0
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 1.6e-58 229.9 169 68.0
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 3.8e-57 225.3 170 67.6
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 3.3e-56 222.2 184 63.0
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 5.6e-56 221.5 169 66.9
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 5.6e-56 221.5 169 66.9
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 1.6e-55 219.9 135 80.7
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 2.1e-55 219.5 169 66.9
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 3.6e-55 218.8 169 66.9
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 4.7e-55 218.4 169 66.3
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 5.7e-53 211.5 170 65.9
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 5.7e-53 211.5 172 59.9
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 3.5e-50 202.2 168 60.1
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 1.0e-49 200.7 131 75.6
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 5.0e-49 198.4 168 57.1
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 1.1e-48 197.2 168 54.8
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.9e-48 196.4 168 62.5
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 5.6e-48 194.9 170 58.2
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 1.6e-47 193.4 141 66.7
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 6.2e-47 191.4 172 58.1
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 6.2e-47 191.4 172 58.1
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 6.2e-47 191.4 172 58.1
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 2.3e-46 189.5 156 60.3
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 3.1e-46 189.1 171 59.1
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 2.9e-44 182.6 176 52.8
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 5.6e-40 168.3 171 49.1
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 2.1e-39 166.4 181 47.0
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 1.1e-35 154.1 99 76.8
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 2.1e-31 139.8 142 50.0
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 1.8e-30 136.7 128 54.7
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 4.0e-30 135.6 115 62.6
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 1.7e-28 130.2 202 37.1
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 4.6e-26 122.1 176 38.1
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 1.7e-25 120.2 172 34.3
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 3.0e-25 119.4 69 79.7
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.7e-20 103.6 93 58.1
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.9e-20 102.8 60 81.7
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.9e-19 100.1 74 74.3
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 1.9e-16 90.1 137 41.6
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 1.4e-14 84.0 60 65.0
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 2.0e-13 80.1 168 30.4
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 4.6e-10 68.9 191 28.3
CAN.G39.28 Capsicum annuum HOM05D001081 ORTHO05D024763 9.0e-06 54.7 45 53.3
unitig_899.g14971 Utricularia gibba HOM05D000351 ORTHO05D006179 9.0e-06 54.7 43 53.5


User provided reference genes

Program Settings