Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 1.2e-256 889.4 483 100.0
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 3.7e-120 436.0 488 56.8
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 7.0e-119 431.8 485 56.3
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 3.0e-114 416.4 497 53.1
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 6.7e-114 415.2 485 54.0
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 1.1e-113 414.5 485 55.3
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 2.0e-113 413.7 496 54.4
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 2.0e-110 403.7 504 53.0
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 2.9e-109 399.8 488 54.7
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 3.2e-108 396.4 496 51.4
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 2.1e-107 393.7 498 52.2
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 4.7e-107 392.5 496 51.8
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 8.0e-107 391.7 495 52.1
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 3.0e-106 389.8 494 51.4
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 4.0e-106 389.4 504 52.0
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 4.0e-106 389.4 500 51.8
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 1.2e-105 387.9 499 51.7
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 4.8e-104 382.5 434 53.9
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 8.3e-104 381.7 484 52.5
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 8.3e-104 381.7 480 52.7
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 8.3e-104 381.7 496 51.2
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 9.1e-103 378.3 484 52.9
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 2.7e-102 376.7 485 52.4
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.3e-101 374.4 496 49.8
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 3.8e-101 372.9 504 49.2
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 4.2e-100 369.4 486 52.9
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 5.5e-100 369.0 496 49.0
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 2.7e-99 366.7 477 52.0
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 2.7e-99 366.7 474 52.3
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 1.8e-98 364.0 500 50.2
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 8.8e-98 361.7 474 53.0
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 8.8e-98 361.7 481 51.6
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 8.8e-98 361.7 585 45.6
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 1.2e-97 361.3 487 49.5
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 4.4e-97 359.4 511 49.9
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 7.5e-97 358.6 506 49.4
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 7.5e-97 358.6 488 50.0
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 9.8e-97 358.2 490 48.8
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 1.7e-96 357.5 511 49.3
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.2e-94 351.3 485 49.1
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 1.6e-94 350.9 474 50.0
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 5.9e-94 349.0 437 54.0
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 2.3e-93 347.1 499 48.9
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 2.9e-93 346.7 484 50.0
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 2.9e-93 346.7 483 48.9
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 8.6e-93 345.1 491 49.3
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 1.1e-92 344.7 466 51.1
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 1.5e-92 344.4 483 48.7
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 2.5e-92 343.6 492 48.0
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 3.3e-92 343.2 475 49.7
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 2.8e-91 340.1 485 49.9
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 3.0e-90 336.7 512 45.7
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.0e-90 336.3 480 48.3
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.2e-89 334.7 480 47.9
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.5e-89 334.3 504 46.4
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.5e-89 334.3 480 47.7
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.6e-89 333.6 484 47.3
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 4.4e-89 332.8 504 46.4
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 5.7e-89 332.4 504 46.0
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 5.7e-89 332.4 476 47.9
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 1.3e-88 331.3 465 48.6
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 3.7e-88 329.7 467 48.0
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 6.3e-88 328.9 489 48.1
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 2.4e-87 327.0 480 49.0
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 7.0e-87 325.5 482 48.5
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 7.0e-87 325.5 512 44.5
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 1.2e-86 324.7 513 45.0
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 1.2e-86 324.7 569 43.2
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 1.6e-86 324.3 488 48.0
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 2.3e-85 320.5 469 48.8
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 2.9e-85 320.1 496 47.4
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 3.9e-85 319.7 471 46.3
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 6.6e-85 318.9 518 47.3
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 6.6e-85 318.9 475 45.9
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 1.5e-84 317.8 467 46.9
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 1.9e-84 317.4 442 48.2
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 4.3e-84 316.2 462 47.4
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 2.1e-83 313.9 470 47.9
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 3.6e-83 313.2 463 46.9
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 4.7e-83 312.8 493 45.0
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.3e-82 310.5 371 54.7
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 4.0e-82 309.7 506 45.8
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 6.8e-82 308.9 532 44.2
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 1.5e-81 307.8 506 45.3
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 1.5e-81 307.8 505 45.0
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 2.9e-80 303.5 478 47.5
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 4.9e-80 302.8 497 44.1
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 1.1e-79 301.6 470 45.5
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 2.4e-79 300.4 477 46.1
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 3.2e-79 300.1 522 45.0
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 9.2e-79 298.5 395 48.4
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 1.2e-78 298.1 501 45.7
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 1.2e-78 298.1 465 46.5
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 1.3e-77 294.7 482 46.3
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 1.3e-77 294.7 500 43.6
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 1.9e-76 290.8 416 48.1
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 2.5e-76 290.4 496 45.6
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 2.8e-75 287.0 498 44.2
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 4.7e-75 286.2 475 44.4
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 8.0e-75 285.4 522 43.5
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 1.4e-74 284.6 545 40.7
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 3.1e-74 283.5 447 45.2
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 8.9e-74 282.0 476 42.9
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.2e-73 281.6 472 43.0
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 3.4e-73 280.0 490 42.2
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 1.1e-71 275.0 353 50.7
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 1.4e-71 274.6 539 42.5
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 4.6e-70 269.6 455 45.7
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 5.1e-69 266.2 471 42.9
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.1e-68 265.0 472 41.3
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 1.6e-67 261.2 465 45.2
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 1.8e-66 257.7 477 44.4
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 6.8e-66 255.8 263 58.9
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 1.4e-63 248.1 463 43.2
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 1.9e-63 247.7 440 41.8
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 4.6e-62 243.0 453 41.9
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 6.6e-61 239.2 468 40.0
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 8.6e-61 238.8 460 41.1
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 5.6e-60 236.1 302 52.3
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 1.6e-59 234.6 386 44.6
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 2.8e-59 233.8 279 53.8
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 4.0e-58 229.9 393 44.8
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 2.2e-56 224.2 491 36.9
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 7.3e-52 209.1 448 38.6
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 3.1e-50 203.8 287 50.2
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 3.1e-50 203.8 434 39.2
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 1.7e-45 188.0 270 48.5
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 9.9e-41 172.2 461 31.7
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 1.2e-38 165.2 409 32.8
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 4.6e-30 136.7 287 37.3
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 5.7e-28 129.8 432 28.9
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 2.8e-27 127.5 174 48.3
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 5.1e-21 106.7 479 26.5
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 8.7e-21 105.9 93 58.1
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.5e-20 105.1 131 55.7
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 1.9e-20 104.8 187 39.0
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 5.7e-20 103.2 324 29.9
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 1.8e-18 98.2 67 68.7
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 1.5e-17 95.1 76 60.5
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.9e-15 88.2 164 34.8
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 6.1e-14 83.2 202 38.1
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 2.0e-12 78.2 309 28.8
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 1.1e-10 72.4 195 35.9
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 3.4e-09 67.4 189 33.9
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 5.9e-09 66.6 169 39.6
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.0e-08 65.9 81 46.9
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 1.7e-08 65.1 78 55.1
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 3.8e-08 63.9 227 31.7
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 1.4e-07 62.0 401 24.4
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 1.9e-07 61.6 155 34.8
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 2.5e-07 61.2 153 39.9
Sabra02G0102900 Salix brachista HOM05D028338 ORTHO05D050528 2.5e-07 61.2 300 26.7
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 1.6e-06 58.5 72 44.4
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 4.7e-06 57.0 196 34.2
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 4.7e-06 57.0 202 33.2


User provided reference genes

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